Материалы:NC 002655

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   LOCUS       NC_002655            5528445 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Escherichia coli O157:H7 EDL933, complete genome.
   ACCESSION   NC_002655
   VERSION     NC_002655.2  GI:16445223
   KEYWORDS    .
   SOURCE      Escherichia coli O157:H7 EDL933
     ORGANISM  Escherichia coli O157:H7 EDL933
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Escherichia.
   REFERENCE   1  (bases 1 to 5528445)
     AUTHORS   Perna,N.T., Plunkett,G.III, Burland,V., Mau,B., Glasner,J.D.,
               Rose,D.J., Mayhew,G.F., Evans,P.S., Gregor,J., Kirkpatrick,H.A.,
               Posfai,G., Hackett,J., Klink,S., Boutin,A., Shao,Y., Miller,L.,
               Grotbeck,E.J., Davis,N.W., Lim,A., Dimalanta,E., Potamousis,K.,
               Apodaca,J., Anantharaman,T.S., Lin,J., Yen,G., Schwartz,D.C.,
               Welch,R.A. and Blattner,F.R.
     TITLE     Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
     JOURNAL   Nature 409 (6819), 529-533 (2001)
      PUBMED   11206551
   REFERENCE   2  (bases 1 to 5528445)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5528445)
     AUTHORS   Perna,N.T., Plunkett,G.III, Burland,V., Mau,B., Glasner,J.D.,
               Rose,D.J., Mayhew,G.F., Evans,P.S., Gregor,J., Kirkpatrick,H.A.,
               Posfai,G., Hackett,J., Klink,S., Boutin,A., Shao,Y., Miller,L.,
               Grotbeck,E.J., Davis,N.W., Lim,A., Dimalanta,E., Potamousis,K.,
               Apodaca,J., Anantharaman,T.S., Lin,J., Yen,G., Schwartz,D.C.,
               Welch,R.A. and Blattner,F.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-OCT-2000) Laboratory of Genetics, University of
               Wisconsin, 445 Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE005174.
               On Oct 26, 2001 this sequence version replaced gi:15799680.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
227103 228644 + 1542 16445223 Z0213 - 16S ribosomal RNA
228713 228789 + 77 16445223 Z0217 - 14 Ile tRNA
228832 228907 + 76 16445223 Z0218 - 02 Ala tRNA
229091 231993 + 2903 16445223 Z0219 - 23S ribosomal RNA
232086 232205 + 120 16445223 Z0226 - 5S ribosomal RNA
232258 232334 + 77 16445223 Z0228 - 06 Asp tRNA
240482 240558 + 77 16445223 Z0242 - 06 Asp tRNA
299983 300058 + 76 16445223 Z0305 - 12 Thr tRNA
402035 402115 + 81 16445223 Z0422 - Xaa tRNA
542492 542629 + 138 16445223 Z0567 - 4.5S RNA; component of ribonucleoprotein
656876 656952 + 77 16445223 Z0695 - 11 Arg tRNA
776372 776446 - 75 16445223 Z0813 - 05 Gln tRNA
776484 776558 - 75 16445223 Z0814 - 05 Gln tRNA
776607 776683 - 77 16445223 Z0815 - 16 Met tRNA
776699 776773 - 75 16445223 Z0816 - 05 Gln tRNA
776808 776882 - 75 16445223 Z0817 - 05 Gln tRNA
776906 776990 - 85 16445223 Z0819 - 15 Leu tRNA
777001 777077 - 77 16445223 Z0820 - 16 Met tRNA
866633 866708 + 76 16445223 Z0911 - 10 Lys tRNA
866744 866819 + 76 16445223 Z0912 - 13 Val tRNA
866822 866897 + 76 16445223 Z0913 - 10 Lys tRNA
866949 867024 + 76 16445223 Z0914 - 13 Val tRNA
867028 867103 + 76 16445223 Z0915 - 10 Lys tRNA
867250 867325 + 76 16445223 Z0917 - 10 Lys tRNA
1146184 1146271 - 88 16445223 Z1227 - 08 Ser tRNA
1254955 1255006 - 52 16445223 Z1327 - RNA similar to DicF encoded within cryptic prophage CP-933M
1295563 1295650 - 88 16445223 Z1388 - 08 Ser tRNA
1351948 1352023 + 76 16445223 Z1461 - 14 Ile tRNA
1352033 1352109 + 77 16445223 Z1462 - 11 Arg tRNA
1352123 1352199 + 77 16445223 Z1463 - 11 Arg tRNA
1541790 1541877 - 88 16445223 Z1665 - 08 Ser tRNA
1640997 1641072 + 76 16445223 Z1790 - 14 Ile tRNA
1641170 1641246 + 77 16445223 Z1792 - 11 Arg tRNA
1824225 1824309 - 85 16445223 Z2006 - 18 Tyr tRNA
1824519 1824603 - 85 16445223 Z2007 - 18 Tyr tRNA
1865882 1865957 + 76 16445223 Z2061 - 14 Ile tRNA
1866038 1866114 + 77 16445223 Z2062 - 11 Arg tRNA
2146344 2146420 - 77 16445223 Z2380 - 11 Arg tRNA
2146521 2146596 - 76 16445223 Z2381 - 14 Ile tRNA
2315774 2315847 - 74 16445223 Z6057 - 11 Arg tRNA
2315864 2315937 - 74 16445223 Z6058 - 11 Arg tRNA
2315948 2316020 - 73 16445223 Z6059 - 14 Ile tRNA
2325955 2326007 + 53 16445223 Z6077 - putative RNA identical to DicF encoded within cryptic prophage CP-933P
2421342 2421418 + 77 16445223 Z2692 - 13 Val tRNA
2421423 2421499 + 77 16445223 Z2693 - 13 Val tRNA
2689298 2689384 - 87 16445223 Z2997 - 15 Leu tRNA
2689397 2689470 - 74 16445223 Z2998 - 19 Cys tRNA
2689524 2689599 - 76 16445223 Z2999 - 01 Gly tRNA
2724987 2725081 - 95 16445223 Z3044 - anti-sense RNA silencer of rcsA gene
2774120 2774196 - 77 16445223 Z3110 - 11 Arg tRNA
2774210 2774286 - 77 16445223 Z3112 - 11 Arg tRNA
2774294 2774369 - 76 16445223 Z3113 - 14 Ile tRNA
2788401 2788490 - 90 16445223 Z3131 - 08 Ser tRNA
2789482 2789557 + 76 16445223 Z3133 - 07 Asn tRNA
2803862 2803937 - 76 16445223 Z3141 - 07 Asn tRNA
2805686 2805761 + 76 16445223 Z3145 - 07 Asn tRNA
2808094 2808169 + 76 16445223 Z3149 - 07 Asn tRNA
3092410 3092486 + 77 16445223 Z3448 - 03 Pro tRNA
3262864 3262938 + 75 16445223 Z3612 - 11 Arg tRNA
3314784 3314859 - 76 16445223 Z3661 - 02 Ala tRNA
3319306 3319381 + 76 16445223 Z3667 - 13 Val tRNA
3319426 3319501 + 76 16445223 Z3668 - 13 Val tRNA
3319548 3319623 + 76 16445223 Z3669 - 13 Val tRNA
3319628 3319703 + 76 16445223 Z3670 - 10 Lys tRNA
3516104 3516223 - 120 16445223 Z3874 - 5S ribosomal RNA
3516316 3519223 - 2908 16445223 Z3875 - 23S ribosomal RNA
3519417 3519492 - 76 16445223 Z3881 - 04 Glu tRNA
3519578 3521124 - 1547 16445223 Z3882 - 16S ribosomal RNA
3545346 3545811 + 466 16445223 Z3914 - 10Sa RNA (tmRNA); tags incomplete translation products for degradation
3575237 3575312 - 76 16445223 Z3952 - 14 Ile tRNA
3609232 3609308 - 77 16445223 Z3992 - 11 Arg tRNA
3609411 3609487 - 77 16445223 Z3993 - 11 Arg tRNA
3609550 3609626 - 77 16445223 Z3995 - 11 Arg tRNA
3609691 3609767 - 77 16445223 Z3996 - 11 Arg tRNA
3609771 3609864 - 94 16445223 Z3997 - 08 Ser tRNA
3737085 3737161 + 77 16445223 Z4131 - 16 Met tRNA
3737195 3737271 + 77 16445223 Z4132 - 16 Met tRNA
3737305 3737381 + 77 16445223 Z4133 - 16 Met tRNA
3804619 3804692 - 74 16445223 Z4202 - 01 Gly tRNA
3860419 3860602 + 184 16445223 Z4248 - 6S RNA
3919272 3919347 + 76 16445223 Z4312 - 17 Phe tRNA
3955129 3955204 + 76 - 16 Met tRNA Добавленно
4022444 4022519 + 76 16445223 Z4422 - 16 Met tRNA Неверная идентификация
4076667 4077043 - 377 16445223 Z4475 - RNase P, RNA component; M1 RNA; processes tRNA,
4127927 4128003 - 77 16445223 Z4532 - 16 Met tRNA
4131786 4131872 - 87 16445223 Z4536 - 15 Leu tRNA
4225646 4225765 - 120 16445223 Z4633 - 5S ribosomal RNA
4225803 4225878 - 76 16445223 Z4635 - 12 Thr tRNA
4225891 4226010 - 120 16445223 Z4636 - 5S ribosomal RNA
4226104 4229009 - 2906 16445223 Z4637 - 23S ribosomal RNA
4229193 4229268 - 76 16445223 Z4643 - 02 Ala tRNA
4229311 4229387 - 77 16445223 Z4644 - 14 Ile tRNA
4229456 4230997 - 1542 16445223 Z4645 - 16S ribosomal RNA
4517666 4517742 - 77 16445223 Z4963 - 03 Pro tRNA
4649752 4649842 + 91 16445223 Z5086 - Sec tRNA
4804233 4805773 + 1541 16445223 Z5259 - 16S ribosomal RNA
4805859 4805934 + 76 16445223 Z5263 - 04 Glu tRNA
4806128 4809032 + 2905 16445223 Z5264 - 23S ribosomal RNA
4809125 4809244 + 120 16445223 Z5271 - 5S ribosomal RNA
4809297 4809373 + 77 16445223 Z5273 - 06 Asp tRNA
4809382 4809457 + 76 16445223 Z5274 - 20 Trp tRNA
4844766 4844842 + 77 16445223 Z5308 - 11 Arg tRNA
4844900 4844976 + 77 16445223 Z5310 - 09 His tRNA
4844997 4845083 + 87 16445223 Z5311 - 15 Leu tRNA
4845126 4845202 + 77 16445223 Z5312 - 03 Pro tRNA
4900418 4901959 + 1542 16445223 Z5373 - 16S ribosomal RNA
4902028 4902104 + 77 16445223 Z5377 - 14 Ile tRNA
4902147 4902222 + 76 16445223 Z5378 - 02 Ala tRNA
4902406 4905310 + 2905 16445223 Z5379 - 23S ribosomal RNA
4905403 4905522 + 120 16445223 Z5386 - 5S ribosomal RNA
4914616 4914724 + 109 16445223 Z5399 - spot 42 RNA, inhibition of DNA synthesis
5044690 5046231 + 1542 16445223 Z5529 - 16S ribosomal RNA
5046317 5046392 + 76 16445223 Z5533 - 04 Glu tRNA
5046586 5049490 + 2905 16445223 Z5534 - 23S ribosomal RNA
5049583 5049702 + 120 16445223 Z5541 - 5S ribosomal RNA
5053151 5053226 + 76 16445223 Z5548 - 12 Thr tRNA
5053235 5053319 + 85 16445223 Z5550 - 18 Tyr tRNA
5053436 5053510 + 75 16445223 Z5551 - 01 Gly tRNA
5053517 5053592 + 76 16445223 Z5552 - 12 Thr tRNA
5085699 5087240 + 1542 16445223 Z5585 - 16S ribosomal RNA
5087326 5087401 + 76 16445223 Z5588 - 04 Glu tRNA
5087595 5090497 + 2903 16445223 Z5589 - 23S ribosomal RNA
5090590 5090709 + 120 16445223 Z5596 - 5S ribosomal RNA
5246987 5247062 - 76 16445223 Z5738 - 17 Phe tRNA
5276070 5276145 + 76 16445223 Z5770 - 01 Gly tRNA
5276182 5276257 + 76 16445223 Z5771 - 01 Gly tRNA
5276293 5276368 + 76 16445223 Z5772 - 01 Gly tRNA
5377002 5377086 + 85 16445223 Z5877 - 15 Leu tRNA
5494433 5494519 - 87 16445223 Z5971 - 15 Leu tRNA