Геном прокариот/Материалы:NC 002662

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   LOCUS       NC_002662            2365589 bp    DNA     circular BCT 07-JUN-2007
   DEFINITION  Lactococcus lactis subsp. lactis Il1403, complete genome.
   ACCESSION   NC_002662
   VERSION     NC_002662.1  GI:15671982
   KEYWORDS    .
   SOURCE      Lactococcus lactis subsp. lactis Il1403
     ORGANISM  Lactococcus lactis subsp. lactis Il1403
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Lactococcus.
   REFERENCE   1  (bases 1 to 2365589)
     AUTHORS   Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
               Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
     TITLE     The complete genome sequence of the lactic acid bacterium
               Lactococcus lactis ssp. lactis IL1403
     JOURNAL   Genome Res. 11 (5), 731-753 (2001)
      PUBMED   11337471
   REFERENCE   2  (bases 1 to 2365589)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2365589)
     AUTHORS   Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
               Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
     TITLE     Direct Submission
     JOURNAL   Submitted (09-JAN-2001) INRA, Genetique Microbienne, Domaine de
               Vilvert, Jouy en Josas 78352, France
   COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
               reference sequence was derived from AE005176.
               regions of prohages are represented by misc_features. Complete
               genome of 5 L.lactis prophages can be found  as separate proviral
               genome records:   34907..49847 NC_002669 - Bacteriophage bIL310
               447143..484092 NC_002668 - Bacteriophage bIL309 502595..517773
               NC_002671 - Bacteriophage bIL312 1036549..1072086 NC_002666 -
               Bacteriophage bIL285 1415283..1457116  NC_002667 - Bacteriophage
               bIL286.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation. tRNA
               predictions performed by tRNAscan-SE v.1.23. rRNA predictions
               performed by BLAST.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
28196 28267 + 72 15671982 L200081 - 04 Glu tRNA
28273 28362 + 90 15671982 L200082 - 08 Ser tRNA
28373 28446 + 74 15671982 L200083 - 16 Met tRNA
28451 28523 + 73 15671982 L200084 - 17 Phe tRNA
28535 28605 + 71 15671982 L200085 - 01 Gly tRNA
28620 28693 + 74 15671982 L200086 - 14 Ile tRNA
28818 28891 + 74 15671982 L200087 - 07 Asn tRNA
56361 56433 + 73 15671982 L200088 - 10 Lys tRNA
123360 123448 - 89 15671982 L200141 - 15 Leu tRNA
126511 126597 - 87 15671982 L200140 - 08 Ser tRNA
155240 155312 - 73 15671982 L200139 - 12 Thr tRNA
256042 256130 - 89 15671982 L200138 - 15 Leu tRNA
275512 275599 - 88 15671982 L200137 - 08 Ser tRNA
282716 282789 + 74 15671982 L200089 - 11 Arg tRNA
283094 283167 + 74 15671982 L200090 - 03 Pro tRNA
424317 424387 + 71 15671982 L200091 - 19 Cys tRNA
447083 447156 + 74 15671982 L200092 - 11 Arg tRNA
517530 517603 + 74 15671982 L200093 - 16 Met tRNA
537561 539108 + 1548 15671982 L200142 - 16S ribosomal RNA
539202 539274 + 73 15671982 L200094 - 02 Ala tRNA
539413 542313 + 2901 15671982 L200143 - 23S ribosomal RNA
542397 542512 + 116 15671982 L200144 - 5S ribosomal RNA
542516 542588 + 73 15671982 L200095 - 13 Val tRNA
542618 542690 + 73 15671982 L200096 - 06 Asp tRNA
542708 542780 + 73 15671982 L200097 - 10 Lys tRNA
542789 542870 + 82 15671982 L200098 - 15 Leu tRNA
542883 542955 + 73 15671982 L200099 - 12 Thr tRNA
542981 543052 + 72 15671982 L200100 - 01 Gly tRNA
543091 543164 + 74 15671982 L200101 - 11 Arg tRNA
543170 543243 + 74 15671982 L200102 - 03 Pro tRNA
543281 543354 + 74 15671982 L200103 - 16 Met tRNA
543367 543440 + 74 15671982 L200104 - 16 Met tRNA
543448 543520 + 73 15671982 L200105 - 17 Phe tRNA
543531 543601 + 71 15671982 L200106 - 01 Gly tRNA
543628 543701 + 74 15671982 L200107 - 14 Ile tRNA
543744 543831 + 88 15671982 L200108 - 08 Ser tRNA
617800 617871 + 72 15671982 L200109 - 11 Arg tRNA
618494 618569 + 76 15671982 L200110 - 10 Lys tRNA
1412349 1412438 - 90 15671982 L200136 - 08 Ser tRNA
1690708 1690779 - 72 15671982 L200135 - 05 Gln tRNA
1711201 1711273 + 73 15671982 L200111 - 11 Arg tRNA
1980491 1980576 - 86 15671982 L200134 - 15 Leu tRNA
1980612 1980683 - 72 15671982 L200133 - 01 Gly tRNA
1980709 1980781 - 73 15671982 L200132 - 12 Thr tRNA
1980794 1980875 - 82 15671982 L200131 - 15 Leu tRNA
1980884 1980956 - 73 15671982 L200130 - 10 Lys tRNA
1980974 1981046 - 73 15671982 L200129 - 06 Asp tRNA
1981076 1981148 - 73 15671982 L200128 - 13 Val tRNA
1981152 1981267 - 116 15671982 L200145 - 5S ribosomal RNA
1981351 1984250 - 2900 15671982 L200146 - 23S ribosomal RNA
1984389 1984461 - 73 15671982 L200127 - 02 Ala tRNA
1984555 1986102 - 1548 15671982 L200147 - 16S ribosomal RNA
2012538 2012621 - 84 15671982 L200126 - 15 Leu tRNA
2151430 2151502 - 73 15671982 L200125 - 12 Thr tRNA
2218214 2218329 - 116 15671982 L200148 - 5S ribosomal RNA
2218413 2221311 - 2899 15671982 L200149 - 23S ribosomal RNA
2221450 2221522 - 73 15671982 L200124 - 02 Ala tRNA
2221616 2223163 - 1548 15671982 L200150 - 16S ribosomal RNA
2260725 2260840 - 116 15671982 L200151 - 5S ribosomal RNA
2260924 2263823 - 2900 15671982 L200152 - 23S ribosomal RNA
2263962 2264034 - 73 15671982 L200123 - 02 Ala tRNA
2264128 2265675 - 1548 15671982 L200153 - 16S ribosomal RNA
2299369 2299451 - 83 15671982 L200122 - 15 Leu tRNA
2340428 2340511 - 84 15671982 L200121 - 15 Leu tRNA
2340524 2340595 - 72 15671982 L200120 - 05 Gln tRNA
2340603 2340675 - 73 15671982 L200119 - 09 His tRNA
2340686 2340756 - 71 15671982 L200118 - 20 Trp tRNA
2340763 2340843 - 81 15671982 L200117 - 18 Tyr tRNA
2340879 2340951 - 73 15671982 L200116 - 13 Val tRNA
2340955 2341070 - 116 15671982 L200154 - 5S ribosomal RNA
2341154 2344054 - 2901 15671982 L200155 - 23S ribosomal RNA
2344193 2344265 - 73 15671982 L200115 - 02 Ala tRNA
2344359 2345906 - 1548 15671982 L200156 - 16S ribosomal RNA
2359943 2360016 - 74 15671982 L200114 - 07 Asn tRNA
2360053 2360124 - 72 15671982 L200113 - 04 Glu tRNA
2360134 2360249 - 116 15671982 L200157 - 5S ribosomal RNA
2360333 2363233 - 2901 15671982 L200158 - 23S ribosomal RNA
2363372 2363444 - 73 15671982 L200112 - 02 Ala tRNA
2363538 2365085 - 1548 15671982 L200159 - 16S ribosomal RNA