Геном прокариот/Материалы:NC 003911

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_003911            4109442 bp    DNA     circular BCT 18-JAN-2006
   DEFINITION  Silicibacter pomeroyi DSS-3, complete genome.
   ACCESSION   NC_003911
   VERSION     NC_003911.11  GI:56694928
   KEYWORDS    .
   SOURCE      Silicibacter pomeroyi DSS-3
     ORGANISM  Silicibacter pomeroyi DSS-3
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Silicibacter.
   REFERENCE   1  (bases 1 to 4109442)
     AUTHORS   Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F.,
               Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R.,
               Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G.,
               Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J.,
               Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T.,
               Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A.,
               Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N.
     TITLE     Genome sequence of Silicibacter pomeroyi reveals adaptations to the
               marine environment
     JOURNAL   Nature 432 (7019), 910-913 (2004)
      PUBMED   15602564
   REFERENCE   2  (bases 1 to 4109442)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-DEC-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4109442)
     AUTHORS   Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F.,
               Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R.,
               Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G.,
               Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J.,
               Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., DeBoy,R.T.,
               Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A.,
               Rosovitz,M., Haft,D.H., Selengut,J. and Ward,N.L.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-OCT-2004) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000031.
               On Dec 17, 2004 this sequence version replaced gi:51904980.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
176231	176306	+	76	56694928	SPO_tRNA-Gln-1	-	^{05 Gln tRNA}
176312	176389	+	78	56694928	SPO_tRNA-Pro-2	-	^{03 Pro tRNA}
228692	228768	-	77	56694928	SPO_tRNA-Pro-3	-	^{03 Pro tRNA}
261910	263364	+	1455	56694928	SPO_Sp16SA	-	16S ribosomal RNA
263580	263656	+	77	56694928	SPO_tRNA-Ile-1	-	^{14 Ile tRNA}
263730	263805	+	76	56694928	SPO_tRNA-Ala-1	-	^{02 Ala tRNA}
264255	267149	+	2895	56694928	SPO_Sp23SA	-	23S ribosomal RNA
267353	267470	+	118	56694928	SPO_Sp5SD	-	5S ribosomal RNA
294934	295009	+	76	56694928	SPO_tRNA-Lys-2	-	^{10 Lys tRNA}
485387	485463	-	77	56694928	SPO_tRNA-Arg-2	-	^{11 Arg tRNA}
537350	537426	+	77	56694928	SPO_tRNA-Arg-3	-	^{11 Arg tRNA}
636094	636168	+	75	56694928	SPO_tRNA-Gln-2	-	^{05 Gln tRNA}
726006	726081	-	76	56694928	SPO_tRNA-Val-2	-	^{13 Val tRNA}
758890	758965	+	76	56694928	SPO_tRNA-Trp-2	-	^{20 Trp tRNA}
1082915	1082990	+	76	56694928	SPO_tRNA-Thr-2	-	^{12 Thr tRNA}
1205683	1205766	-	84	56694928	SPO_tRNA-Pseudo-2	-
1217181	1217255	-	75	56694928	SPO_tRNA-Gly-2	-	^{01 Gly tRNA}
1217973	1218047	-	75	56694928	SPO_tRNA-Gly-3	-	^{01 Gly tRNA}
1218081	1218155	-	75	56694928	SPO_tRNA-Gly-4	-	^{01 Gly tRNA}
1307509	1307582	-	74	56694928	SPO_tRNA-Cys-2	-	^{19 Cys tRNA}
1458077	1458163	+	87	56694928	SPO_tRNA-Leu-2	-	^{15 Leu tRNA}
1849403	1849477	-	75	56694928	SPO_tRNA-Glu-2	-	^{04 Glu tRNA}
1849667	1849741	-	75	56694928	SPO_tRNA-Glu-3	-	^{04 Glu tRNA}
1886364	1886440	+	77	56694928	SPO_tRNA-His-1	-	^{09 His tRNA}
2032300	2032611	-	312	56694928	SPO_SptmRNA1	-	sRNA
2046619	2046708	+	90	56694928	SPO_tRNA-Ser-2	-	^{08 Ser tRNA}
2119397	2119486	+	90	56694928	SPO_tRNA-Ser-3	-	^{08 Ser tRNA}
2140232	2140307	-	76	56694928	SPO_tRNA-Thr-3	-	^{12 Thr tRNA}
2140752	2140828	-	77	56694928	SPO_tRNA-Arg-4	-	^{11 Arg tRNA}
2173838	2173911	+	74	56694928	SPO_tRNA-Gly-5	-	^{01 Gly tRNA}
2251315	2251389	+	75	56694928	SPO_tRNA-Asn-1	-	^{07 Asn tRNA}
2251642	2251727	-	86	56694928	SPO_tRNA-Leu-3	-	^{15 Leu tRNA}
2274996	2275072	-	77	56694928	SPO_tRNA-Pro-4	-	^{03 Pro tRNA}
2308217	2308292	+	76	56694928	SPO_tRNA-Met-2	-	^{16 Met tRNA}
2310677	2310751	+	75	56694928	SPO_tRNA-Asn-2	-	^{07 Asn tRNA}
2429430	2429513	-	84	56694928	SPO_tRNA-Leu-4	-	^{15 Leu tRNA}
2645397	2645473	+	77	56694928	SPO_tRNA-Pro-5	-	^{03 Pro tRNA}
2755575	2755651	-	77	56694928	SPO_tRNA-Asp-1	-	^{06 Asp tRNA}
2755704	2755780	-	77	56694928	SPO_tRNA-Asp-2	-	^{06 Asp tRNA}
2766850	2766924	-	75	56694928	SPO_tRNA-Val-3	-	^{13 Val tRNA}
2929931	2930020	-	90	56694928	SPO_tRNA-Ser-4	-	^{08 Ser tRNA}
3163914	3164254	-	341	56694928	SPO_SprnpB1	-	sRNA
3206889	3206963	-	75	56694928	SPO_tRNA-Gly-6	-	^{01 Gly tRNA}
3207063	3207149	-	87	56694928	SPO_tRNA-Leu-5	-	^{15 Leu tRNA}
3461953	3462029	-	77	56694928	SPO_tRNA-Met-3	-	^{16 Met tRNA}
3462072	3462189	-	118	56694928	SPO_Sp5SE	-	5S ribosomal RNA
3462393	3465287	-	2895	56694928	SPO_Sp23SB	-	23S ribosomal RNA
3465737	3465812	-	76	56694928	SPO_tRNA-Ala-2	-	^{02 Ala tRNA}
3465886	3465962	-	77	56694928	SPO_tRNA-Ile-2	-	^{14 Ile tRNA}
3466178	3467632	-	1455	56694928	SPO_Sp16SB	-	16S ribosomal RNA
3481060	3481134	+	75	56694928	SPO_tRNA-Val-4	-	^{13 Val tRNA}
3701370	3701446	+	77	56694928	SPO_tRNA-Met-4	-	^{16 Met tRNA}
3827177	3827252	+	76	56694928	SPO_tRNA-Ala-3	-	^{02 Ala tRNA}
3871397	3871486	+	90	56694928	SPO_tRNA-Ser-5	-	^{08 Ser tRNA}
3892522	3892598	-	77	56694928	SPO_tRNA-Arg-5	-	^{11 Arg tRNA}
3985347	3985433	+	87	56694928	SPO_tRNA-Leu-6	-	^{15 Leu tRNA}
4010290	4010366	-	77	56694928	SPO_tRNA-Met-5	-	^{16 Met tRNA}
4010409	4010526	-	118	56694928	SPO_Sp5SF	-	5S ribosomal RNA
4010730	4013624	-	2895	56694928	SPO_Sp23SC	-	23S ribosomal RNA
4014074	4014149	-	76	56694928	SPO_tRNA-Ala-4	-	^{02 Ala tRNA}
4014223	4014299	-	77	56694928	SPO_tRNA-Ile-3	-	^{14 Ile tRNA}
4014515	4015969	-	1455	56694928	SPO_Sp16SC	-	16S ribosomal RNA