Материалы:NC 004337

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   LOCUS       NC_004337            4607203 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Shigella flexneri 2a str. 301, complete genome.
   ACCESSION   NC_004337
   VERSION     NC_004337.1  GI:24111450
   KEYWORDS    .
   SOURCE      Shigella flexneri 2a str. 301
     ORGANISM  Shigella flexneri 2a str. 301
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4607203)
     AUTHORS   Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H.,
               Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D.,
               Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K.,
               Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y.,
               Hou,Y. and Yu,J.
     TITLE     Genome sequence of Shigella flexneri 2a: insights into
               pathogenicity through comparison with genomes of Escherichia coli
               K12 and O157
     JOURNAL   Nucleic Acids Res. 30 (20), 4432-4441 (2002)
      PUBMED   12384590
   REFERENCE   2  (bases 1 to 4607203)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-OCT-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4607203)
     AUTHORS   Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B.,
               Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y.,
               Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y.,
               Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-MAY-2001) State Key Laboratory for Moleclular
               Virology and Genetic Engineering, Microbial Genome Center of
               Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
               Beijing 100176, P.R.China
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE005674.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
214669 216209 + 1541 24111450 SF4435 - 16S ribosomal RNA
216278 216354 + 77 24111450 SF4436 - 14 Ile tRNA
216397 216472 + 76 24111450 SF4437 - 02 Ala tRNA
216745 216820 + 76 24111450 SF4438 - 04 Glu tRNA
217014 219917 + 2904 24111450 SF4439 - 23S ribosomal RNA
220012 220130 + 119 24111450 SF4440 - 5S ribosomal RNA
220183 220259 + 77 24111450 SF4441 - 06 Asp tRNA
229833 229909 + 77 24111450 SF4442 - 06 Asp tRNA
311201 311276 + 76 24111450 SF4443 - 12 Thr tRNA
412979 413092 + 114 24111450 SF4554 - 4.5S RNA; component of ribonucleoprotein particle
479933 480009 + 77 24111450 SF4444 - 11 Arg tRNA
576337 576412 - 76 24111450 SF4445 - 10 Lys tRNA
576416 576491 - 76 24111450 SF4446 - 13 Val tRNA
576627 576702 - 76 24111450 SF4447 - 10 Lys tRNA
654586 654662 + 77 24111450 SF4448 - 16 Met tRNA
654672 654756 + 85 24111450 SF4449 - 15 Leu tRNA
654780 654854 + 75 24111450 SF4450 - 05 Gln tRNA
654889 654963 + 75 24111450 SF4451 - 05 Gln tRNA
654979 655055 + 77 24111450 SF4452 - 16 Met tRNA
655103 655177 + 75 24111450 SF4453 - 05 Gln tRNA
655215 655289 + 75 24111450 SF4454 - 05 Gln tRNA
711827 711903 + 77 24111450 SF4455 - 16 Met tRNA
711905 711981 + 77 24111450 SF4456 - 11 Arg tRNA
711984 712058 + 75 24111450 SF4457 - 12 Thr tRNA
712062 712136 + 75 24111450 SF4458 - 01 Gly tRNA
720865 720941 + 77 24111450 SF4459 - 16 Met tRNA
720943 721019 + 77 24111450 SF4460 - 11 Arg tRNA
721022 721097 + 76 24111450 SF4461 - 12 Thr tRNA
721101 721175 + 75 24111450 SF4462 - 01 Gly tRNA
877256 877343 - 88 24111450 SF4463 - 08 Ser tRNA
1019548 1019635 - 88 24111450 SF4464 - 08 Ser tRNA
1072445 1072532 - 88 24111450 SF4465 - 08 Ser tRNA
1282577 1282661 - 85 24111450 SF4466 - 18 Tyr tRNA
1578004 1578080 - 77 24111450 SF4467 - 11 Arg tRNA
1578182 1578257 - 76 24111450 SF4468 - 16 Met tRNA
1727499 1727575 + 77 24111450 SF4469 - 13 Val tRNA
1936890 1936964 - 75 24111450 SF4470 - 01 Gly tRNA
1936968 1937043 - 76 24111450 SF4471 - 12 Thr tRNA
1937046 1937122 - 77 24111450 SF4472 - 11 Arg tRNA
1937124 1937199 - 76 24111450 SF4473 - 16 Met tRNA
1988098 1988184 - 87 24111450 SF4474 - 15 Leu tRNA
1988197 1988270 - 74 24111450 SF4475 - 19 Cys tRNA
1988325 1988400 - 76 24111450 SF4476 - 01 Gly tRNA
2025094 2025180 - 87 24111450 SF4555 - anti-sense RNA silencer of rcsA gene
2060922 2060996 - 75 24111450 SF4477 - 01 Gly tRNA
2061000 2061075 - 76 24111450 SF4478 - 12 Thr tRNA
2061078 2061154 - 77 24111450 SF4479 - 10 Lys tRNA
2061156 2061231 - 76 24111450 SF4480 - 16 Met tRNA
2066450 2066539 - 90 24111450 SF4481 - 08 Ser tRNA
2067531 2067606 + 76 24111450 SF4482 - 07 Asn tRNA
2075382 2075457 - 76 24111450 SF4483 - 07 Asn tRNA
2077190 2077265 + 76 24111450 SF4484 - 07 Asn tRNA
2079600 2079676 + 77 24111450 SF4485 - Xaa tRNA
2309415 2309492 + 78 24111450 SF4486 - 03 Pro tRNA
2334488 2334579 + 92 24111450 SF4556 - MicF RNA; inhibitor of OpmF
2476607 2476681 + 75 24111450 SF4487 - 11 Arg tRNA
2519453 2519528 - 76 24111450 SF4488 - 02 Ala tRNA
2519568 2519643 - 76 24111450 SF4489 - 02 Ala tRNA
2522349 2522424 + 76 24111450 SF4490 - 13 Val tRNA
2522468 2522543 + 76 24111450 SF4491 - 13 Val tRNA
2522548 2522623 + 76 24111450 SF4492 - 10 Lys tRNA
2723111 2723229 - 119 24111450 SF4493 - 5S ribosomal RNA
2723324 2726227 - 2904 24111450 SF4494 - 23S ribosomal RNA
2726411 2726486 - 76 24111450 SF4495 - 02 Ala tRNA
2726529 2726605 - 77 24111450 SF4496 - 14 Ile tRNA
2726674 2728214 - 1541 24111450 SF4497 - 16S ribosomal RNA
2754038 2754493 + 456 24111450 SF4557 - 10Sa RNA (tmRNA); tags incomplete translation products for degradation
2758367 2758442 - 76 24111450 SF4498 - 16 Met tRNA
2791550 2791626 - 77 24111450 SF4499 - 11 Arg tRNA
2791691 2791767 - 77 24111450 SF4500 - 11 Arg tRNA
2791832 2791908 - 77 24111450 SF4501 - 11 Arg tRNA
2791973 2792049 - 77 24111450 SF4502 - 11 Arg tRNA
2792053 2792145 - 93 24111450 SF4503 - 08 Ser tRNA
2883156 2883524 - 369 24111450 SF4558 - CsrB RNA; inhibitor of CsrA
2903131 2903243 + 113 24111450 SF4559 - gcvB RNA; regulator
2907821 2907897 + 77 24111450 SF4504 - 16 Met tRNA
2907931 2908007 + 77 24111450 SF4505 - 16 Met tRNA
2957652 2957725 - 74 24111450 SF4506 - 01 Gly tRNA
2989897 2990080 + 184 24111450 SF4560 - 6S RNA
3052464 3052539 + 76 24111450 SF4507 - 17 Phe tRNA
3206073 3206148 + 76 24111450 SF4508 - 16 Met tRNA
3261710 3262086 - 377 24111450 SF4561 - RNase P, RNA component; M1 RNA; processes tRNA, 4.5S RNA
3310396 3310472 - 77 24111450 SF4509 - 16 Met tRNA
3314256 3314342 - 87 24111450 SF4510 - 15 Leu tRNA
3406299 3406417 - 119 24111450 SF4511 - 5S ribosomal RNA
3406456 3406531 - 76 24111450 SF4512 - 12 Thr tRNA
3406544 3406662 - 119 24111450 SF4513 - 5S ribosomal RNA
3406757 3409660 - 2904 24111450 SF4514 - 23S ribosomal RNA
3409854 3409929 - 76 24111450 SF4515 - 04 Glu tRNA
3410015 3411556 - 1542 24111450 SF4516 - 16S ribosomal RNA
3679680 3679756 - 77 24111450 SF4517 - 03 Pro tRNA
3806404 3806494 + 91 24111450 SF4518 - Sec tRNA
3951291 3952832 + 1542 24111450 SF4519 - 16S ribosomal RNA
3952918 3952993 + 76 24111450 SF4564 - 04 Glu tRNA
3953187 3956090 + 2904 24111450 SF4521 - 23S ribosomal RNA
3956185 3956303 + 119 24111450 SF4522 - 5S ribosomal RNA
3956356 3956432 + 77 24111450 SF4523 - 06 Asp tRNA
3956441 3956516 + 76 24111450 SF4524 - 20 Trp tRNA
3990939 3991015 + 77 24111450 SF4525 - 11 Arg tRNA
3991074 3991149 + 76 24111450 SF4526 - 09 His tRNA
3991170 3991256 + 87 24111450 SF4527 - 15 Leu tRNA
3991299 3991375 + 77 24111450 SF4528 - 03 Pro tRNA
4048482 4050023 + 1542 24111450 SF4529 - 16S ribosomal RNA
4050109 4050184 + 76 24111450 SF4530 - 04 Glu tRNA
4050378 4053281 + 2904 24111450 SF4531 - 23S ribosomal RNA
4053376 4053494 + 119 24111450 SF4532 - 5S ribosomal RNA
4062588 4062696 + 109 24111450 SF4562 - spot 42 RNA, inhibition of DNA synthesis
4178307 4178416 - 110 24111450 SF4563 - OxyS RNA; regulator
4186671 4188212 + 1542 24111450 SF4533 - 16S ribosomal RNA
4188298 4188373 + 76 24111450 SF4534 - 04 Glu tRNA
4188567 4191470 + 2904 24111450 SF4535 - 23S ribosomal RNA
4191565 4191683 + 119 24111450 SF4536 - 5S ribosomal RNA
4195141 4195216 + 76 24111450 SF4537 - 12 Thr tRNA
4195225 4195309 + 85 24111450 SF4538 - 18 Tyr tRNA
4195426 4195500 + 75 24111450 SF4539 - 01 Gly tRNA
4195507 4195582 + 76 24111450 SF4540 - 12 Thr tRNA
4227109 4228650 + 1542 24111450 SF4541 - 16S ribosomal RNA
4228736 4228811 + 76 24111450 SF4542 - 04 Glu tRNA
4229005 4231908 + 2904 24111450 SF4543 - 23S ribosomal RNA
4232003 4232121 + 119 24111450 SF4544 - 5S ribosomal RNA
4396148 4396232 - 85 24111450 SF4545 - 15 Leu tRNA
4466171 4466246 - 76 24111450 SF4546 - 17 Phe tRNA
4496947 4497022 + 76 24111450 SF4547 - 01 Gly tRNA
4497180 4497255 + 76 24111450 SF4548 - 01 Gly tRNA
4497291 4497366 + 76 24111450 SF4549 - 01 Gly tRNA
4497402 4497477 + 76 24111450 SF4550 - 01 Gly tRNA
4572939 4573025 - 87 24111450 SF4551 - 15 Leu tRNA
4573061 4573149 - 89 24111450 SF4552 - 15 Leu tRNA
4573178 4573264 - 87 24111450 SF4553 - 15 Leu tRNA