Материалы:NC 004459

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004459            3281944 bp    DNA     circular BCT 22-NOV-2006
   DEFINITION  Vibrio vulnificus CMCP6 chromosome I, complete sequence.
   ACCESSION   NC_004459
   VERSION     NC_004459.2  GI:117956319
   KEYWORDS    .
   SOURCE      Vibrio vulnificus CMCP6
     ORGANISM  Vibrio vulnificus CMCP6
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Vibrio.
   REFERENCE   1  (bases 1 to 3281944)
     AUTHORS   Kim,Y.R., Lee,S.E., Kim,C.M., Kim,S.Y., Shin,E.K., Shin,D.H.,
               Chung,S.S., Choy,H.E., Progulske-Fox,A., Hillman,J.D., Handfield,M.
               and Rhee,J.H.
     TITLE     Characterization and Pathogenic Significance of Vibrio vulnificus
               Antigens Preferentially Expressed in Septicemic Patients
     JOURNAL   Infect. Immun. 71 (10), 5461-5471 (2003)
      PUBMED   14500463
   REFERENCE   2  (bases 1 to 3281944)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3281944)
     AUTHORS   Jeong,H., Moon,Y.H. and Kim,J.J.
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2002) Daedeok BioCommunity, 461-6, Jeonmin-dong,
               Yuseong-gu, Daejeon 305-811, South Korea
   REFERENCE   4  (bases 1 to 3281944)
     AUTHORS   Rhee,J.H., Kim,S.Y., Chung,S.S., Lee,S.E. and Choy,H.E.
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2002) Department of Microbiology, Genome Research
               Center for Enteropathogenic Bacteria, Chonnam National University
               Medical College, Hak-1-Dong, Dong-Gu, Kwang-Ju 501-746, South Korea
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE016795.
               On Nov 14, 2006 this sequence version replaced gi:27363490.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
68368	68441	+	74	117956319	VV1_tRNAPro1	-	^{03 Pro tRNA}
225719	225792	+	74	117956319	VV1_tRNAArg1	-	^{11 Arg tRNA}
237944	238017	-	74	117956319	VV1_tRNAPro4	-	^{03 Pro tRNA}
253124	253197	+	74	117956319	VV1_tRNAMet1	-	^{16 Met tRNA}
253239	253320	+	82	117956319	VV1_tRNALeu1	-	^{15 Leu tRNA}
253334	253405	+	72	117956319	VV1_tRNAGln1	-	^{05 Gln tRNA}
253486	253559	+	74	117956319	VV1_tRNAMet2	-	^{16 Met tRNA}
253605	253686	+	82	117956319	VV1_tRNALeu2	-	^{15 Leu tRNA}
253744	253815	+	72	117956319	VV1_tRNAGln2	-	^{05 Gln tRNA}
253864	253945	+	82	117956319	VV1_tRNALeu3	-	^{15 Leu tRNA}
253960	254033	+	74	117956319	VV1_tRNAMet3	-	^{16 Met tRNA}
254081	254162	+	82	117956319	VV1_tRNALeu4	-	^{15 Leu tRNA}
254220	254291	+	72	117956319	VV1_tRNAPseudo1	-	Xaa tRNA
254341	254422	+	82	117956319	VV1_tRNALeu5	-	^{15 Leu tRNA}
254481	254552	+	72	117956319	VV1_tRNAGln3	-	^{05 Gln tRNA}
254601	254682	+	82	117956319	VV1_tRNALeu6	-	^{15 Leu tRNA}
254742	254813	+	72	117956319	VV1_tRNAGln4	-	^{05 Gln tRNA}
254861	254942	+	82	117956319	VV1_tRNALeu7	-	^{15 Leu tRNA}
471902	471975	-	74	117956319	VV1_tRNATrp2	-	^{20 Trp tRNA}
472048	472121	-	74	117956319	VV1_tRNAAsp6	-	^{06 Asp tRNA}
472150	472270	-	121	117956319	VV1_r01	-	5S ribosomal RNA
472382	475281	-	2900	117956319	VV1_r02	-	23S ribosomal RNA
475561	475633	-	73	117956319	VV1_tRNAAla5	-	^{02 Ala tRNA}
475699	477240	-	1542	117956319	VV1_r03	-	16S ribosomal RNA
650109	650181	+	73	117956319	VV1_tRNAMet4	-	^{16 Met tRNA}
928223	928296	-	74	117956319	VV1_tRNAAsp5	-	^{06 Asp tRNA}
928326	928446	-	121	117956319	VV1_r04	-	5S ribosomal RNA
928558	931456	-	2899	117956319	VV1_r05	-	23S ribosomal RNA
931797	931869	-	73	117956319	VV1_tRNAVal5	-	^{13 Val tRNA}
931887	931959	-	73	117956319	VV1_tRNAAla4	-	^{02 Ala tRNA}
931977	932049	-	73	117956319	VV1_tRNALys3	-	^{10 Lys tRNA}
932054	932126	-	73	117956319	VV1_tRNAGlu4	-	^{04 Glu tRNA}
932194	933735	-	1542	117956319	VV1_r06	-	16S ribosomal RNA
934065	934184	-	120	117956319	VV1_r07	-	5S ribosomal RNA
934296	937194	-	2899	117956319	VV1_r08	-	23S ribosomal RNA
937475	937547	-	73	117956319	VV1_tRNAAla3	-	^{02 Ala tRNA}
937561	937634	-	74	117956319	VV1_tRNAIle3	-	^{14 Ile tRNA}
937697	939238	-	1542	117956319	VV1_r09	-	16S ribosomal RNA
974664	974737	-	74	117956319	VV1_tRNAAsp4	-	^{06 Asp tRNA}
974767	974887	-	121	117956319	VV1_r10	-	5S ribosomal RNA
974999	977897	-	2899	117956319	VV1_r11	-	23S ribosomal RNA
978179	978251	-	73	117956319	VV1_tRNAAla2	-	^{02 Ala tRNA}
978265	978338	-	74	117956319	VV1_tRNAIle2	-	^{14 Ile tRNA}
978401	979942	-	1542	117956319	VV1_r12	-	16S ribosomal RNA
1060774	1062317	+	1544	117956319	VV1_r13	-	16S ribosomal RNA
1062385	1062457	+	73	117956319	VV1_tRNAGlu1	-	^{04 Glu tRNA}
1062462	1062534	+	73	117956319	VV1_tRNALys1	-	^{10 Lys tRNA}
1062566	1062638	+	73	117956319	VV1_tRNAVal1	-	^{13 Val tRNA}
1062918	1065816	+	2899	117956319	VV1_r14	-	23S ribosomal RNA
1065928	1066048	+	121	117956319	VV1_r15	-	5S ribosomal RNA
1066149	1066236	+	88	117956319	VV1_tRNASer1	-	^{08 Ser tRNA}
1078372	1078445	+	74	117956319	VV1_tRNAArg2	-	^{11 Arg tRNA}
1078487	1078559	+	73	117956319	VV1_tRNAHis1	-	^{09 His tRNA}
1078589	1078662	+	74	117956319	VV1_tRNAPro2	-	^{03 Pro tRNA}
1078740	1078812	+	73	117956319	VV1_tRNAHis2	-	^{09 His tRNA}
1078840	1078913	+	74	117956319	VV1_tRNAPro3	-	^{03 Pro tRNA}
1170288	1171829	+	1542	117956319	VV1_r16	-	16S ribosomal RNA
1171897	1171969	+	73	117956319	VV1_tRNAGlu2	-	^{04 Glu tRNA}
1171974	1172046	+	73	117956319	VV1_tRNALys2	-	^{10 Lys tRNA}
1172078	1172150	+	73	117956319	VV1_tRNAVal2	-	^{13 Val tRNA}
1172429	1175327	+	2899	117956319	VV1_r17	-	23S ribosomal RNA
1175439	1175559	+	121	117956319	VV1_r18	-	5S ribosomal RNA
1175589	1175662	+	74	117956319	VV1_tRNAAsp1	-	^{06 Asp tRNA}
1181970	1182042	+	73	117956319	VV1_tRNAThr1	-	^{12 Thr tRNA}
1182093	1182174	+	82	117956319	VV1_tRNATyr1	-	^{18 Tyr tRNA}
1182213	1182284	+	72	117956319	VV1_tRNAGly1	-	^{01 Gly tRNA}
1182302	1182374	+	73	117956319	VV1_tRNAThr2	-	^{12 Thr tRNA}
1271824	1271896	+	73	117956319	VV1_tRNAGly2	-	^{01 Gly tRNA}
1271933	1272005	+	73	117956319	VV1_tRNAGly3	-	^{01 Gly tRNA}
1272042	1272114	+	73	117956319	VV1_tRNAGly4	-	^{01 Gly tRNA}
1272151	1272223	+	73	117956319	VV1_tRNAGly5	-	^{01 Gly tRNA}
1272261	1272333	+	73	117956319	VV1_tRNAGly6	-	^{01 Gly tRNA}
1272393	1272466	+	74	117956319	VV1_tRNAMet5	-	^{16 Met tRNA}
1272512	1272585	+	74	117956319	VV1_tRNAMet6	-	^{16 Met tRNA}
1272630	1272703	+	74	117956319	VV1_tRNAMet7	-	^{16 Met tRNA}
1272749	1272822	+	74	117956319	VV1_tRNAMet8	-	^{16 Met tRNA}
1389749	1391290	+	1542	117956319	VV1_r19	-	16S ribosomal RNA
1391358	1391430	+	73	117956319	VV1_tRNAGlu3	-	^{04 Glu tRNA}
1391709	1394607	+	2899	117956319	VV1_r20	-	23S ribosomal RNA
1394719	1394839	+	121	117956319	VV1_r21	-	5S ribosomal RNA
1394868	1394941	+	74	117956319	VV1_tRNAAsp2	-	^{06 Asp tRNA}
1394998	1395071	+	74	117956319	VV1_tRNATrp1	-	^{20 Trp tRNA}
1468795	1468876	+	82	117956319	VV1_tRNALeu8	-	^{15 Leu tRNA}
1478334	1479875	+	1542	117956319	VV1_r22	-	16S ribosomal RNA
1479938	1480011	+	74	117956319	VV1_tRNAIle1	-	^{14 Ile tRNA}
1480025	1480097	+	73	117956319	VV1_tRNAAla1	-	^{02 Ala tRNA}
1480378	1483276	+	2899	117956319	VV1_r23	-	23S ribosomal RNA
1483352	1483472	+	121	117956319	VV1_r24	-	5S ribosomal RNA
1483520	1483592	+	73	117956319	VV1_tRNAThr3	-	^{12 Thr tRNA}
1483601	1483720	+	120	117956319	VV1_r25	-	5S ribosomal RNA
1483783	1483856	+	74	117956319	VV1_tRNAAsp3	-	^{06 Asp tRNA}
1485722	1485794	-	73	117956319	VV1_tRNAAsn4	-	^{07 Asn tRNA}
1485838	1485910	-	73	117956319	VV1_tRNAThr6	-	^{12 Thr tRNA}
1485949	1486021	-	73	117956319	VV1_tRNAAsn3	-	^{07 Asn tRNA}
1486064	1486136	-	73	117956319	VV1_tRNAPhe3	-	^{17 Phe tRNA}
1486147	1486219	-	73	117956319	VV1_tRNAThr5	-	^{12 Thr tRNA}
1486281	1486353	-	73	117956319	VV1_tRNAPhe2	-	^{17 Phe tRNA}
1488451	1488523	-	73	117956319	VV1_tRNAAsn2	-	^{07 Asn tRNA}
1488541	1488613	-	73	117956319	VV1_tRNAThr4	-	^{12 Thr tRNA}
1488671	1488743	-	73	117956319	VV1_tRNAPhe1	-	^{17 Phe tRNA}
1570221	1570310	+	90	117956319	VV1_tRNASer2	-	^{08 Ser tRNA}
1570343	1570416	+	74	117956319	VV1_tRNAArg3	-	^{11 Arg tRNA}
1570443	1570531	+	89	117956319	VV1_tRNASer3	-	^{08 Ser tRNA}
1570619	1570692	+	74	117956319	VV1_tRNAArg4	-	^{11 Arg tRNA}
1570786	1570859	+	74	117956319	VV1_tRNAArg5	-	^{11 Arg tRNA}
1570907	1570980	+	74	117956319	VV1_tRNAArg6	-	^{11 Arg tRNA}
1571073	1571146	+	74	117956319	VV1_tRNAArg7	-	^{11 Arg tRNA}
1571192	1571265	+	74	117956319	VV1_tRNAArg8	-	^{11 Arg tRNA}
1676904	1676984	+	81	117956319	VV1_tRNALeu9	-	^{15 Leu tRNA}
1677045	1677118	+	74	117956319	VV1_tRNAMet9	-	^{16 Met tRNA}
2015574	2015647	+	74	117956319	VV1_tRNAArg9	-	^{11 Arg tRNA}
2184013	2184097	+	85	117956319	VV1_tRNASer4	-	^{08 Ser tRNA}
2825056	2825129	-	74	117956319	VV1_tRNAVal4	-	^{13 Val tRNA}
2825168	2825241	-	74	117956319	VV1_tRNAVal3	-	^{13 Val tRNA}
3120610	3120682	-	73	117956319	VV1_tRNAGly8	-	^{01 Gly tRNA}
3120711	3120794	-	84	117956319	VV1_tRNALeu10	-	^{15 Leu tRNA}
3120858	3120930	-	73	117956319	VV1_tRNAGly7	-	^{01 Gly tRNA}
3120937	3121007	-	71	117956319	VV1_tRNACys1	-	^{19 Cys tRNA}
3161985	3162057	+	73	117956319	VV1_tRNAAsn1	-	^{07 Asn tRNA}
3191763	3191850	+	88	117956319	VV1_tRNASer5	-	^{08 Ser tRNA}
3235765	3235846	+	82	117956319	VV1_tRNATyr2	-	^{18 Tyr tRNA}
3235940	3236021	+	82	117956319	VV1_tRNATyr3	-	^{18 Tyr tRNA}
3236115	3236196	+	82	117956319	VV1_tRNATyr4	-	^{18 Tyr tRNA}