Материалы:NC 004547

Материал из Викиверситета
Вы находитесь в Инкубаторе
Это исходный материал (как правило загружен ботом)

Обработать/использовать материал

   LOCUS       NC_004547            5064019 bp    DNA     circular BCT 02-DEC-2005
   DEFINITION  Erwinia carotovora subsp. atroseptica SCRI1043, complete genome.
   ACCESSION   NC_004547
   VERSION     NC_004547.2  GI:50118965
   KEYWORDS    complete genome.
   SOURCE      Erwinia carotovora subsp. atroseptica SCRI1043
     ORGANISM  Erwinia carotovora subsp. atroseptica SCRI1043
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Pectobacterium.
   REFERENCE   1  (bases 1 to 5064019)
     AUTHORS   Bell,K.S., Sebaihia,M., Pritchard,L., Holden,M.T., Hyman,L.J.,
               Holeva,M.C., Thomson,N.R., Bentley,S.D., Churcher,L.J., Mungall,K.,
               Atkin,R., Bason,N., Brooks,K., Chillingworth,T., Clark,K.,
               Doggett,J., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S.,
               Norbertczak,H., Ormond,D., Price,C., Quail,M.A., Sanders,M.,
               Walker,D., Whitehead,S., Salmond,G.P., Birch,P.R., Parkhill,J. and
               Toth,I.K.
     TITLE     Genome sequence of the enterobacterial phytopathogen Erwinia
               carotovora subsp. atroseptica and characterization of virulence
               factors
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (30), 11105-11110 (2004)
      PUBMED   15263089
   REFERENCE   2  (bases 1 to 5064019)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5064019)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-FEB-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX950851.
               On Jul 9, 2004 this sequence version replaced gi:28850470.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
16895 18438 + 1544 50118965 ECAr001 - 16S ribosomal RNA
18580 18655 + 76 50118965 ECAt001 - 04 Glu tRNA
18884 21791 + 2908 50118965 ECAr002 - 23S ribosomal RNA
21919 22038 + 120 50118965 ECAr003 - 5S ribosomal RNA
28751 28868 + 118 50118965 ECAs001 -
55285 55361 + 77 50118965 ECAt002 - 03 Pro tRNA
240628 242170 + 1543 50118965 ECAr004 - 16S ribosomal RNA
242245 242321 + 77 50118965 ECAt003 - 14 Ile tRNA
242364 242439 + 76 50118965 ECAt004 - 02 Ala tRNA
242656 245563 + 2908 50118965 ECAr005 - 23S ribosomal RNA
245691 245810 + 120 50118965 ECAr006 - 5S ribosomal RNA
249788 249863 + 76 50118965 ECAt005 - 12 Thr tRNA
249879 249963 + 85 50118965 ECAt006 - 18 Tyr tRNA
250093 250167 + 75 50118965 ECAt007 - 01 Gly tRNA
250174 250249 + 76 50118965 ECAt008 - 12 Thr tRNA
273556 273693 - 138 50118965 ECAs002 -
282456 283998 + 1543 50118965 ECAr007 - 16S ribosomal RNA
284073 284149 + 77 50118965 ECAt009 - 14 Ile tRNA
284192 284267 + 76 50118965 ECAt010 - 02 Ala tRNA
284484 287391 + 2908 50118965 ECAr008 - 23S ribosomal RNA
287519 287638 + 120 50118965 ECAr009 - 5S ribosomal RNA
373579 373881 + 303 50118965 ECAs003 -
465940 466024 + 85 50118965 ECAt011 - 15 Leu tRNA
526656 526839 + 184 50118965 ECAs004 -
688584 688659 - 76 50118965 ECAt012 - 17 Phe tRNA
726565 726764 - 200 50118965 ECAs005 -
750486 750561 - 76 50118965 ECAt013 - 16 Met tRNA
773027 773113 + 87 50118965 ECAt014 - 15 Leu tRNA
776983 777059 + 77 50118965 ECAt015 - 16 Met tRNA
783488 783604 + 117 50118965 ECAs006 - ribosomal S15 gene leader
783836 784004 - 169 50118965 ECAs007 -
806751 806837 + 87 50118965 ECAt016 - 15 Leu tRNA
806915 807001 + 87 50118965 ECAt017 - 15 Leu tRNA
807076 807162 + 87 50118965 ECAt018 - 15 Leu tRNA
847939 848012 + 74 50118965 ECAt019 - 01 Gly tRNA
926946 927308 - 363 50118965 ECAs008 -
1001971 1002171 + 201 50118965 ECAs009 -
1075223 1075298 - 76 50118965 ECAt020 - 17 Phe tRNA
1121082 1121158 - 77 50118965 ECAt021 - 16 Met tRNA
1121207 1121283 - 77 50118965 ECAt022 - 16 Met tRNA
1121332 1121408 - 77 50118965 ECAt023 - 16 Met tRNA
1137209 1137283 - 75 50118965 ECAs010 -
1144373 1144720 + 348 50118965 ECAs011 -
1154216 1154372 + 157 50118965 ECAs012 -
1320488 1320609 + 122 50118965 ECAs013 -
1496589 1496662 - 74 50118965 ECAt024 - 05 Gln tRNA
1496669 1496745 - 77 50118965 ECAt025 - 16 Met tRNA
1496800 1496874 - 75 50118965 ECAt026 - 05 Gln tRNA
1496910 1496984 - 75 50118965 ECAt027 - 05 Gln tRNA
1497041 1497125 - 85 50118965 ECAt028 - 15 Leu tRNA
1497133 1497209 - 77 50118965 ECAt029 - 16 Met tRNA
1556667 1556742 + 76 50118965 ECAt030 - 10 Lys tRNA
1556938 1557013 + 76 50118965 ECAt031 - 10 Lys tRNA
1586840 1586927 + 88 50118965 ECAt032 - 08 Ser tRNA
1727911 1727986 - 76 50118965 ECAt033 - 07 Asn tRNA
1927139 1927214 - 76 50118965 ECAt034 - 07 Asn tRNA
1989132 1989221 - 90 50118965 ECAt035 - 08 Ser tRNA
2012343 2012430 + 88 50118965 ECAt036 - 08 Ser tRNA
2038031 2038368 - 338 50118965 ECAs014 -
2106158 2106269 - 112 50118965 ECAs015 -
2159593 2159669 - 77 50118965 ECAt037 - 13 Val tRNA
2179660 2179736 - 77 50118965 ECAt038 - 13 Val tRNA
2247607 2247703 + 97 50118965 ECAs016 -
2643735 2643819 + 85 50118965 ECAt039 - 18 Tyr tRNA
2786690 2786788 - 99 50118965 ECAs017 -
2786697 2786830 + 134 50118965 ECAs018 -
2846049 2846138 + 90 50118965 ECAt040 - 08 Ser tRNA
3091867 3091943 + 77 50118965 ECAt041 - 03 Pro tRNA
3227600 3227686 - 87 50118965 ECAt042 - 15 Leu tRNA
3227695 3227768 - 74 50118965 ECAt043 - 19 Cys tRNA
3227820 3227895 - 76 50118965 ECAt044 - 01 Gly tRNA
3232835 3232910 - 76 50118965 ECAt045 - 10 Lys tRNA
3236126 3236201 + 76 50118965 ECAt046 - 07 Asn tRNA
3446540 3446614 + 75 50118965 ECAt047 - 11 Arg tRNA
3483053 3483129 + 77 50118965 ECAt048 - 11 Arg tRNA
3578398 3578494 - 97 50118965 ECAs019 -
3695406 3695481 - 76 50118965 ECAt049 - 02 Ala tRNA
3695529 3695604 - 76 50118965 ECAt050 - 02 Ala tRNA
3698520 3698595 + 76 50118965 ECAt051 - 13 Val tRNA
3698654 3698729 + 76 50118965 ECAt052 - 13 Val tRNA
3698797 3698872 + 76 50118965 ECAt053 - 13 Val tRNA
3698880 3698955 + 76 50118965 ECAt054 - 10 Lys tRNA
3748710 3748786 - 77 50118965 ECAt055 - 06 Asp tRNA
3754266 3754342 - 77 50118965 ECAt056 - 06 Asp tRNA
3754393 3754512 - 120 50118965 ECAr010 - 5S ribosomal RNA
3754640 3757547 - 2908 50118965 ECAr011 - 23S ribosomal RNA
3757776 3757851 - 76 50118965 ECAt057 - 04 Glu tRNA
3757993 3759535 - 1543 50118965 ECAr012 - 16S ribosomal RNA
3777866 3777938 + 73 50118965 ECAs020 -
3781091 3781167 - 77 50118965 ECAt058 - 11 Arg tRNA
3781221 3781297 - 77 50118965 ECAt059 - 11 Arg tRNA
3781369 3781445 - 77 50118965 ECAt060 - 11 Arg tRNA
3781454 3781546 - 93 50118965 ECAt061 - 08 Ser tRNA
3880169 3880244 - 76 50118965 ECAt062 - 12 Thr tRNA
3945847 3945967 - 121 50118965 ECAr013 - 5S ribosomal RNA
3946001 3946076 - 76 50118965 ECAt063 - 12 Thr tRNA
3946093 3946212 - 120 50118965 ECAr014 - 5S ribosomal RNA
3946340 3949247 - 2908 50118965 ECAr015 - 23S ribosomal RNA
3949476 3949551 - 76 50118965 ECAt064 - 04 Glu tRNA
3949693 3951235 - 1543 50118965 ECAr016 - 16S ribosomal RNA
4090515 4090605 - 91 50118965 ECAs021 -
4296610 4296706 + 97 50118965 ECAs022 -
4416625 4416700 - 76 50118965 ECAt065 - 01 Gly tRNA
4434381 4434456 - 76 50118965 ECAt066 - 01 Gly tRNA
4434533 4434608 - 76 50118965 ECAt067 - 01 Gly tRNA
4472319 4472438 - 120 50118965 ECAr017 - 5S ribosomal RNA
4472566 4475473 - 2908 50118965 ECAr018 - 23S ribosomal RNA
4475679 4475754 - 76 50118965 ECAt068 - 02 Ala tRNA
4475797 4475873 - 77 50118965 ECAt069 - 14 Ile tRNA
4475948 4477490 - 1543 50118965 ECAr019 - 16S ribosomal RNA
4490506 4490617 - 112 50118965 ECAs023 -
4651380 4651485 - 106 50118965 ECAs024 -
4692513 4692589 - 77 50118965 ECAt070 - 03 Pro tRNA
4692633 4692719 - 87 50118965 ECAt071 - 15 Leu tRNA
4692769 4692844 - 76 50118965 ECAt072 - 09 His tRNA
4692961 4693037 - 77 50118965 ECAt073 - 11 Arg tRNA
4741571 4741646 - 76 50118965 ECAt074 - 20 Trp tRNA
4741701 4741777 - 77 50118965 ECAt075 - 06 Asp tRNA
4741828 4741947 - 120 50118965 ECAr020 - 5S ribosomal RNA
4742075 4744982 - 2908 50118965 ECAr021 - 23S ribosomal RNA
4745211 4745286 - 76 50118965 ECAt076 - 04 Glu tRNA
4745428 4746970 - 1543 50118965 ECAr022 - 16S ribosomal RNA