Материалы:NC 004741

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   LOCUS       NC_004741            4599354 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Shigella flexneri 2a str. 2457T, complete genome.
   ACCESSION   NC_004741
   VERSION     NC_004741.1  GI:30061571
   KEYWORDS    .
   SOURCE      Shigella flexneri 2a str. 2457T
     ORGANISM  Shigella flexneri 2a str. 2457T
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4599354)
     AUTHORS   Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
               Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
               Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
               Schwartz,D.C. and Blattner,F.R.
     TITLE     Complete Genome Sequence and Comparative Genomics of Shigella
               flexneri Serotype 2a Strain 2457T
     JOURNAL   Infect. Immun. 71 (5), 2775-2786 (2003)
      PUBMED   12704152
   REFERENCE   2  (bases 1 to 4599354)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4599354)
     AUTHORS   Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
               Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
               Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
               Schwartz,D.C. and Blattner,F.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (13-JUN-2002) Genetics Laboratory, University of
               Wisconsin - Madison, 445 Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE014073.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
15602 15656 + 55 30061571 S0016 - antisense RNA
214156 215696 + 1541 30061571 S0194 - 16S ribosomal RNA
215765 215841 + 77 30061571 S0195 - 14 Ile tRNA
215884 215959 + 76 30061571 S0196 - 02 Ala tRNA
216143 219046 + 2904 30061571 S0197 - 23S ribosomal RNA
219141 219259 + 119 30061571 S0198 - 5S ribosomal RNA
219312 219388 + 77 30061571 S0199 - 06 Asp tRNA
228962 229038 + 77 30061571 S0210 - 06 Asp tRNA
313753 313828 + 76 30061571 S0315 - 12 Thr tRNA
412780 412893 + 114 30061571 S0407 - 4.5S RNA
479736 479812 + 77 30061571 S0474 - 11 Arg tRNA
572230 572305 - 76 30061571 S0563 - 10 Lys tRNA
572309 572384 - 76 30061571 S0564 - 13 Val tRNA
572436 572511 - 76 30061571 S0565 - 10 Lys tRNA
572514 572589 - 76 30061571 S0566 - 13 Val tRNA
572725 572800 - 76 30061571 S0567 - 10 Lys tRNA
650819 650895 + 77 30061571 S0631 - 16 Met tRNA
650904 650988 + 85 30061571 S0632 - 15 Leu tRNA
651012 651086 + 75 30061571 S0634 - 05 Gln tRNA
651121 651195 + 75 30061571 S0636 - 05 Gln tRNA
651211 651287 + 77 30061571 S0637 - 16 Met tRNA
651336 651410 + 75 30061571 S0639 - 05 Gln tRNA
651448 651522 + 75 30061571 S0640 - 05 Gln tRNA
709308 709384 + 77 30061571 S0710 - 14 Ile tRNA
709386 709462 + 77 30061571 S0711 - 11 Arg tRNA
709465 709539 + 75 30061571 S0712 - 12 Thr tRNA
709543 709617 + 75 30061571 S0713 - 01 Gly tRNA
718318 718394 + 77 30061571 S0727 - 14 Ile tRNA
718396 718472 + 77 30061571 S0728 - 11 Arg tRNA
718475 718550 + 76 30061571 S0729 - 12 Thr tRNA
718554 718628 + 75 30061571 S0730 - 01 Gly tRNA
872069 872156 - 88 30061571 S0883 - 08 Ser tRNA
1023509 1023596 - 88 30061571 S1039 - 08 Ser tRNA
1076674 1076761 - 88 30061571 S1099 - 08 Ser tRNA
1282470 1282554 - 85 30061571 S1317 - 18 Tyr tRNA
1445087 1446581 + 1495 30061571 S1481 -
1616401 1616477 - 77 30061571 S1662 - 11 Arg tRNA
1616579 1616654 - 76 30061571 S1663 - 14 Ile tRNA
1765714 1765790 + 77 30061571 S1825 - 13 Val tRNA
1765795 1765871 + 77 30061571 S1826 - 13 Val tRNA
1914353 1914427 - 75 30061571 S1982 - 01 Gly tRNA
1914431 1914506 - 76 30061571 S1983 - 12 Thr tRNA
1914509 1914585 - 77 30061571 S1984 - 11 Arg tRNA
1914587 1914662 - 76 30061571 S1985 - 14 Ile tRNA
1964753 1964839 - 87 30061571 S2048 - 15 Leu tRNA
1964852 1964925 - 74 30061571 S2049 - 19 Cys tRNA
1964980 1965055 - 76 30061571 S2050 - 01 Gly tRNA
2001774 2001860 - 87 30061571 S2093 - antsense RNA silencer of rcsA gene
2036312 2036387 - 76 30061571 S2137 - 12 Thr tRNA
2036468 2036543 - 76 30061571 S2138 - 14 Ile tRNA
2041762 2041851 - 90 30061571 S2147 - 08 Ser tRNA
2042843 2042918 + 76 30061571 S2149 - 07 Asn tRNA
2050720 2050795 - 76 30061571 S2162 - 07 Asn tRNA
2052528 2052603 + 76 30061571 S2164 - 07 Asn tRNA
2054938 2055013 + 76 30061571 S2167 - 07 Asn tRNA
2288868 2288944 + 77 30061571 S2405 - 03 Pro tRNA
2313945 2314036 + 92 30061571 S2430 - regulatory antisense RNA
2454726 2454800 + 75 30061571 S2561 - 11 Arg tRNA
2497591 2497666 - 76 30061571 S2601 - 02 Ala tRNA
2497706 2497781 - 76 30061571 S2602 - 02 Ala tRNA
2500481 2500556 + 76 30061571 S2606 - 13 Val tRNA
2500601 2500676 + 76 30061571 S2607 - 13 Val tRNA
2500681 2500756 + 76 30061571 S2608 - 10 Lys tRNA
2716555 2716673 - 119 30061571 S2823 - 5S ribosomal RNA
2716768 2719671 - 2904 30061571 S2824 - 23S ribosomal RNA
2719865 2719940 - 76 30061571 S2825 - 04 Glu tRNA
2720026 2721566 - 1541 30061571 S2826 - 16S ribosomal RNA
2748766 2749128 + 363 30061571 S2858 - 10Sa RNA (tmRNA)
2753003 2753078 - 76 30061571 S2864 - 14 Ile tRNA
2786184 2786260 - 77 30061571 S2905 - 11 Arg tRNA
2786325 2786401 - 77 30061571 S2906 - 11 Arg tRNA
2786466 2786542 - 77 30061571 S2907 - 11 Arg tRNA
2786607 2786683 - 77 30061571 S2908 - 11 Arg tRNA
2786687 2786779 - 93 30061571 S2909 - 08 Ser tRNA
2877845 2878213 - 369 30061571 S3000 - CsrA-binding RNA
2902512 2902588 + 77 30061571 S3023 - 16 Met tRNA
2902622 2902698 + 77 30061571 S3024 - 16 Met tRNA
2951077 2951150 - 74 30061571 S3066 - 01 Gly tRNA
2981986 2982169 + 184 30061571 S3096 - 6S RNA
3044640 3044715 + 76 30061571 S3167 - 17 Phe tRNA
3194737 3194812 + 76 30061571 S3316 - 14 Ile tRNA
3252828 3253204 - 377 30061571 S3375 - RNA component of RNase P
3301512 3301588 - 77 30061571 S3429 - 16 Met tRNA
3305372 3305458 - 87 30061571 S3432 - 15 Leu tRNA
3396385 3396497 - 113 30061571 S3528 - 5S ribosomal RNA
3396538 3396613 - 76 30061571 S3529 - 12 Thr tRNA
3396626 3396744 - 119 30061571 S3530 - 5S ribosomal RNA
3396839 3399742 - 2904 30061571 S3531 - 23S ribosomal RNA
3399926 3400001 - 76 30061571 S3532 - 02 Ala tRNA
3400044 3400120 - 77 30061571 S3533 - 14 Ile tRNA
3400189 3401730 - 1542 30061571 S3534 - 16S ribosomal RNA
3541100 3541218 - 119 30061571 S3653 - 5S ribosomal RNA
3541313 3544216 - 2904 30061571 S3654 - 23S ribosomal RNA
3544410 3544485 - 76 30061571 S3655 - 04 Glu tRNA
3544571 3546112 - 1542 30061571 S3656 - 16S ribosomal RNA
3577637 3577712 - 76 30061571 S3683 - 12 Thr tRNA
3577719 3577793 - 75 30061571 S3684 - 01 Gly tRNA
3577910 3577994 - 85 30061571 S3685 - 18 Tyr tRNA
3578003 3578078 - 76 30061571 S3686 - 12 Thr tRNA
3581536 3581654 - 119 30061571 S3691 - 5S ribosomal RNA
3581749 3584652 - 2904 30061571 S3692 - 23S ribosomal RNA
3584846 3584921 - 76 30061571 S3693 - 04 Glu tRNA
3585007 3586548 - 1542 30061571 S3694 - 16S ribosomal RNA
3594803 3594911 + 109 30061571 S3702 - regulatory RNA
3710524 3710632 - 109 30061571 S3812 - spot 42 RNA
3719726 3719844 - 119 30061571 S3821 - 5S ribosomal RNA
3719939 3722842 - 2904 30061571 S3822 - 23S ribosomal RNA
3723026 3723101 - 76 30061571 S3823 - 02 Ala tRNA
3723144 3723220 - 77 30061571 S3824 - 14 Ile tRNA
3723289 3724830 - 1542 30061571 S3825 - 16S ribosomal RNA
3781918 3781994 - 77 30061571 S3886 - 03 Pro tRNA
3782037 3782123 - 87 30061571 S3887 - 15 Leu tRNA
3782144 3782219 - 76 30061571 S3888 - 09 His tRNA
3782278 3782354 - 77 30061571 S3889 - 11 Arg tRNA
3816778 3816853 - 76 30061571 S3923 - 20 Trp tRNA
3816862 3816938 - 77 30061571 S3924 - 06 Asp tRNA
3816991 3817109 - 119 30061571 S3925 - 5S ribosomal RNA
3817204 3820107 - 2904 30061571 S3926 - 23S ribosomal RNA
3820301 3820376 - 76 30061571 S3927 - 04 Glu tRNA
3820462 3822003 - 1542 30061571 S3928 - 16S ribosomal RNA
3968763 3968853 - 91 30061571 S4071 - Sec tRNA
4095462 4095538 + 77 30061571 S4190 - 03 Pro tRNA
4388344 4388428 - 85 30061571 S4485 - 15 Leu tRNA
4458364 4458439 - 76 30061571 S4555 - 17 Phe tRNA
4489107 4489182 + 76 30061571 S4585 - 01 Gly tRNA
4489340 4489415 + 76 30061571 S4586 - 01 Gly tRNA
4489451 4489526 + 76 30061571 S4587 - 01 Gly tRNA
4489562 4489637 + 76 30061571 S4588 - 01 Gly tRNA
4565093 4565179 - 87 30061571 S4671 - 15 Leu tRNA
4565214 4565300 - 87 30061571 S4672 - 15 Leu tRNA
4565329 4565415 - 87 30061571 S4673 - 15 Leu tRNA