Геном прокариот/Материалы:NC 005072

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005072            1657990 bp    DNA     circular BCT 21-NOV-2006
   DEFINITION  Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete
               genome.
   ACCESSION   NC_005072
   VERSION     NC_005072.1  GI:33860560
   KEYWORDS    complete genome.
   SOURCE      Prochlorococcus marinus subsp. pastoris str. CCMP1986
               (Prochlorococcus marinus MED4)
     ORGANISM  Prochlorococcus marinus subsp. pastoris str. CCMP1986
               Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
               Prochlorococcus.
   REFERENCE   1  (bases 1 to 1657990)
     AUTHORS   Rocap,G., Larimer,F.W., Lamerdin,J., Malfatti,S., Chain,P.,
               Ahlgren,N.A., Arellano,A., Coleman,M., Hauser,L., Hess,W.R.,
               Johnson,Z.I., Land,M., Lindell,D., Post,A.F., Regala,W., Shah,M.,
               Shaw,S.L., Steglich,C., Sullivan,M.B., Ting,C.S., Tolonen,A.,
               Webb,E.A., Zinser,E.R. and Chisholm,S.W.
     TITLE     Genome divergence in two Prochlorococcus ecotypes reflects oceanic
               niche differentiation
     JOURNAL   Nature 424 (6952), 1042-1047 (2003)
      PUBMED   12917642
   REFERENCE   2  (bases 1 to 1657990)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-AUG-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1657990)
     AUTHORS   Larimer,F. and Rocap,G.
     CONSRTM   Prochlorococcus genome consortium
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2003) Submitted on behalf of the Prochlorococcus
               genome consortium, the DOE Joint Genome Institute, Production
               Genomics Facility, 2800 Mitchell Drive, Walnut Creek, CA 94598,
               USA, and the Genome Analysis Group, Oak Ridge National Laboratory,
               1060 Commerce Park Drive, Oak Ridge, TN 37831, USA;
               larimerfw@ornl.gov
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX548174.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
56335	56592	-	258	33860560	RNA_43	-	tmRNA, 10Sa RNA, SsrA (presursor permuted)
65454	65535	-	82	33860560	RNA_37	-	^{15 Leu tRNA}
122896	122967	+	72	33860560	RNA_1	-	^{07 Asn tRNA}
229473	229554	+	82	33860560	RNA_2	-	^{15 Leu tRNA}
249345	249418	-	74	33860560	RNA_36	-	^{11 Arg tRNA}
264442	264517	-	76	33860560	RNA_35	-	^{16 Met tRNA}
296377	296452	-	76	33860560	RNA_34	-	^{17 Phe tRNA}
305096	305167	-	72	33860560	RNA_33	-	^{12 Thr tRNA}
313061	318126	+	5066	33860560	RNA_38	-	rRNA operon
313061	314525	+	1465	33860560	RNA_39	-	16S ribosomal RNA
314649	314722	+	74	33860560	RNA_3	-	^{14 Ile tRNA}
314735	314807	+	73	33860560	RNA_4	-	^{02 Ala tRNA}
315074	317948	+	2875	33860560	RNA_40	-	23S ribosomal RNA
318012	318126	+	115	33860560	RNA_41	-	5S ribosomal RNA
368348	368419	-	72	33860560	RNA_32	-	^{12 Thr tRNA}
368430	368511	-	82	33860560	RNA_31	-	^{18 Tyr tRNA}
450064	450137	-	74	33860560	RNA_30	-	^{06 Asp tRNA}
450520	450592	-	73	33860560	RNA_29	-	^{20 Trp tRNA}
538180	538265	+	86	33860560	RNA_5	-	^{15 Leu tRNA}
625757	625846	-	90	33860560	RNA_28	-	^{08 Ser tRNA}
776396	776472	-	77	33860560	RNA_27	-	^{16 Met tRNA}
818172	818243	+	72	33860560	RNA_6	-	^{12 Thr tRNA}
819740	819813	-	74	33860560	RNA_26	-	^{16 Met tRNA}
861144	861230	-	87	33860560	RNA_25	-	^{08 Ser tRNA}
914442	914515	+	74	33860560	RNA_7	-	^{03 Pro tRNA}
1020083	1020155	-	73	33860560	RNA_24	-	^{04 Glu tRNA}
1063867	1063938	+	72	33860560	RNA_8	-	^{10 Lys tRNA}
1071431	1071504	+	74	33860560	RNA_9	-	^{03 Pro tRNA}
1115986	1116070	-	85	33860560	RNA_23	-	^{08 Ser tRNA}
1143410	1143483	+	74	33860560	RNA_10	-	^{11 Arg tRNA}
1208565	1208637	-	73	33860560	RNA_22	-	^{02 Ala tRNA}
1252993	1253074	+	82	33860560	RNA_11	-	^{15 Leu tRNA}
1258262	1258334	+	73	33860560	RNA_12	-	^{09 His tRNA}
1263327	1263426	-	100	33860560	RNA_44	-	signal recognition particle RNA (4.5 S RNA)
1274670	1274740	-	71	33860560	RNA_21	-	^{01 Gly tRNA}
1306262	1306333	+	72	33860560	RNA_13	-	^{13 Val tRNA}
1469551	1469639	-	89	33860560	RNA_20	-	^{08 Ser tRNA}
1489483	1489554	+	72	33860560	RNA_14	-	^{05 Gln tRNA}
1502203	1502276	+	74	33860560	RNA_15	-	^{11 Arg tRNA}
1516866	1516936	+	71	33860560	RNA_16	-	^{19 Cys tRNA}
1533818	1533891	-	74	33860560	RNA_19	-	^{11 Arg tRNA}
1533930	1534303	+	374	33860560	RNA_42	-	bacterial ribonuclease P RNA component of ribozyme
1570753	1570824	-	72	33860560	RNA_18	-	^{01 Gly tRNA}
1617346	1617417	-	72	33860560	RNA_17	-	^{13 Val tRNA}