Геном прокариот/Материалы:NC 005362

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   LOCUS       NC_005362            1992676 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Lactobacillus johnsonii NCC 533, complete genome.
   ACCESSION   NC_005362
   VERSION     NC_005362.1  GI:42518084
   KEYWORDS    .
   SOURCE      Lactobacillus johnsonii NCC 533
     ORGANISM  Lactobacillus johnsonii NCC 533
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1992676)
     AUTHORS   van der Kaaij,H., Desiere,F., Mollet,B. and Germond,J.E.
     TITLE     L-alanine auxotrophy of Lactobacillus johnsonii as demonstrated by
               physiological, genomic, and gene complementation approaches
     JOURNAL   Appl. Environ. Microbiol. 70 (3), 1869-1873 (2004)
      PUBMED   15006820
   REFERENCE   2  (bases 1 to 1992676)
     AUTHORS   Pridmore,R.D., Berger,B., Desiere,F., Vilanova,D., Barretto,C.,
               Pittet,A.C., Zwahlen,M.C., Rouvet,M., Altermann,E., Barrangou,R.,
               Mollet,B., Mercenier,A., Klaenhammer,T., Arigoni,F. and Schell,M.A.
     TITLE     The genome sequence of the probiotic intestinal bacterium
               Lactobacillus johnsonii NCC 533
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (8), 2512-2517 (2004)
      PUBMED   14983040
   REFERENCE   3  (bases 1 to 1992676)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 1992676)
     AUTHORS   Pridmore,R.D., Berger,B., Desiere,F., Vilanova,D., Barretto,C.,
               Pittet,A.-C., Zwahlen,M.-C., Rouvet,M., Barrangou,R., Altermann,E.,
               Mollet,B., Mercenier,A., Klaenhammer,T., Arigoni,F. and Schell,M.A.
     TITLE     Direct Submission
     JOURNAL   Submitted (01-DEC-2003) Nutrition and Health, Nestle Research
               Center, P.O.Box 44, Lausanne 26, Vaud CH-1000, Switzerland
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017198.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
19503 19578 + 76 42518084 LJT001 - 12 Thr tRNA
21315 21390 + 76 42518084 LJT002 - 12 Thr tRNA
85937 86009 - 73 42518084 LJT003 - 10 Lys tRNA
87617 87689 - 73 42518084 LJT004 - 10 Lys tRNA
209038 209110 + 73 42518084 LJT005 - 12 Thr tRNA
228891 228961 - 71 42518084 LJT006 - 01 Gly tRNA
327595 327669 + 75 42518084 LJT007 - 01 Gly tRNA
327710 327783 + 74 42518084 LJT008 - 03 Pro tRNA
340597 340667 + 71 42518084 LJT009 - 08 Ser tRNA
340727 340798 + 72 42518084 LJT010 - 04 Glu tRNA
340937 341018 + 82 42518084 LJT011 - 18 Tyr tRNA
341099 341172 + 74 42518084 LJT012 - 17 Phe tRNA
558550 560200 + 1651 42518084 LJR007 - 16S ribosomal RNA
560300 563350 + 3051 42518084 LJR013 - 23S ribosomal RNA
563337 563453 + 117 42518084 LJR002 - 5S ribosomal RNA
563466 563538 + 73 42518084 LJT013 - 07 Asn tRNA
563561 563650 + 90 42518084 LJT014 - 08 Ser tRNA
563769 563840 + 72 42518084 LJT015 - 04 Glu tRNA
563864 563936 + 73 42518084 LJT016 - 13 Val tRNA
707462 707534 + 73 42518084 LJT017 - 11 Arg tRNA
775832 775903 - 72 42518084 LJT018 - Xaa tRNA
828305 828376 + 72 42518084 LJT019 - 04 Glu tRNA
828382 828454 + 73 42518084 LJT020 - 05 Gln tRNA
1316937 1317009 - 73 42518084 LJT021 - 04 Glu tRNA
1330469 1330556 - 88 42518084 LJT022 - 08 Ser tRNA
1454674 1454747 - 74 42518084 LJT023 - 11 Arg tRNA
1553948 1554034 - 87 42518084 LJT024 - 15 Leu tRNA
1609296 1609384 - 89 42518084 LJT025 - 15 Leu tRNA
1631292 1631363 - 72 42518084 LJT026 - 05 Gln tRNA
1631419 1631500 - 82 42518084 LJT027 - 18 Tyr tRNA
1633336 1633407 - 72 42518084 LJT028 - 05 Gln tRNA
1643767 1643839 - 73 42518084 LJT029 - 12 Thr tRNA
1659716 1659788 - 73 42518084 LJT030 - 07 Asn tRNA
1659801 1659917 - 117 42518084 LJR003 - 5S ribosomal RNA
1659904 1662954 - 3051 42518084 LJR015 - 23S ribosomal RNA
1663054 1664704 - 1651 42518084 LJR008 - 16S ribosomal RNA
1665073 1665162 - 90 42518084 LJT031 - 08 Ser tRNA
1665165 1665238 - 74 42518084 LJT032 - 14 Ile tRNA
1665247 1665320 - 74 42518084 LJT033 - 01 Gly tRNA
1665338 1665410 - 73 42518084 LJT034 - 17 Phe tRNA
1665415 1665487 - 73 42518084 LJT035 - 06 Asp tRNA
1665491 1665564 - 74 42518084 LJT036 - 16 Met tRNA
1665596 1665669 - 74 42518084 LJT037 - 16 Met tRNA
1665683 1665756 - 74 42518084 LJT038 - 16 Met tRNA
1665787 1665860 - 74 42518084 LJT039 - 03 Pro tRNA
1665866 1665939 - 74 42518084 LJT040 - 11 Arg tRNA
1665949 1666034 - 86 42518084 LJT041 - 15 Leu tRNA
1666047 1666118 - 72 42518084 LJT042 - 01 Gly tRNA
1666137 1666209 - 73 42518084 LJT043 - 12 Thr tRNA
1666211 1666295 - 85 42518084 LJT044 - 15 Leu tRNA
1666316 1666388 - 73 42518084 LJT045 - 10 Lys tRNA
1666391 1666463 - 73 42518084 LJT046 - 13 Val tRNA
1666468 1666584 - 117 42518084 LJR001 - 5S ribosomal RNA
1666571 1669621 - 3051 42518084 LJR014 - 23S ribosomal RNA
1669721 1671371 - 1651 42518084 LJR009 - 16S ribosomal RNA
1677348 1677431 - 84 42518084 LJT047 - 15 Leu tRNA
1677463 1677533 - 71 42518084 LJT048 - 19 Cys tRNA
1677554 1677625 - 72 42518084 LJT049 - 05 Gln tRNA
1677630 1677705 - 76 42518084 LJT050 - 09 His tRNA
1677720 1677790 - 71 42518084 LJT051 - 20 Trp tRNA
1677798 1677879 - 82 42518084 LJT052 - 18 Tyr tRNA
1677884 1677956 - 73 42518084 LJT053 - 17 Phe tRNA
1677962 1678034 - 73 42518084 LJT054 - 06 Asp tRNA
1678038 1678111 - 74 42518084 LJT055 - 16 Met tRNA
1678119 1678209 - 91 42518084 LJT056 - 08 Ser tRNA
1678236 1678307 - 72 42518084 LJT057 - 04 Glu tRNA
1679522 1679611 - 90 42518084 LJT058 - 08 Ser tRNA
1679614 1679687 - 74 42518084 LJT059 - 14 Ile tRNA
1679696 1679769 - 74 42518084 LJT060 - 01 Gly tRNA
1679787 1679859 - 73 42518084 LJT061 - 17 Phe tRNA
1679864 1679936 - 73 42518084 LJT062 - 06 Asp tRNA
1679940 1680013 - 74 42518084 LJT063 - 16 Met tRNA
1680045 1680118 - 74 42518084 LJT064 - 16 Met tRNA
1680132 1680205 - 74 42518084 LJT065 - 16 Met tRNA
1680236 1680309 - 74 42518084 LJT066 - 03 Pro tRNA
1680315 1680388 - 74 42518084 LJT067 - 11 Arg tRNA
1680398 1680483 - 86 42518084 LJT068 - 15 Leu tRNA
1680496 1680567 - 72 42518084 LJT069 - 01 Gly tRNA
1680586 1680658 - 73 42518084 LJT070 - 12 Thr tRNA
1680660 1680744 - 85 42518084 LJT071 - 15 Leu tRNA
1680765 1680837 - 73 42518084 LJT072 - 10 Lys tRNA
1680840 1680912 - 73 42518084 LJT073 - 13 Val tRNA
1680917 1681033 - 117 42518084 LJR004 - 5S ribosomal RNA
1681020 1684070 - 3051 42518084 LJR016 - 23S ribosomal RNA
1684170 1685820 - 1651 42518084 LJR010 - 16S ribosomal RNA
1879252 1879324 - 73 42518084 LJT074 - 07 Asn tRNA
1879337 1879453 - 117 42518084 LJR005 - 5S ribosomal RNA
1879440 1882488 - 3049 42518084 LJR017 - 23S ribosomal RNA
1882545 1882617 - 73 42518084 LJT075 - 02 Ala tRNA
1882653 1882726 - 74 42518084 LJT076 - 14 Ile tRNA
1882821 1884471 - 1651 42518084 LJR011 - 16S ribosomal RNA
1884764 1884839 - 76 42518084 LJT077 - 07 Asn tRNA
1884852 1884968 - 117 42518084 LJR006 - 5S ribosomal RNA
1884955 1888003 - 3049 42518084 LJR018 - 23S ribosomal RNA
1888060 1888132 - 73 42518084 LJT078 - 02 Ala tRNA
1888168 1888241 - 74 42518084 LJT079 - 14 Ile tRNA
1888336 1889986 - 1651 42518084 LJR012 - 16S ribosomal RNA