Геном прокариот/Материалы:NC 006576

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_006576            2696255 bp    DNA     circular BCT 23-JAN-2007
   DEFINITION  Synechococcus elongatus PCC 6301, complete genome.
   ACCESSION   NC_006576
   VERSION     NC_006576.1  GI:56750010
   KEYWORDS    .
   SOURCE      Synechococcus elongatus PCC 6301
     ORGANISM  Synechococcus elongatus PCC 6301
               Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
   REFERENCE   1  (bases 1 to 2696255)
     AUTHORS   Sugita,C., Ogata,K., Shikata,M., Jikuya,H., Takano,J.,
               Furumichi,M., Kanehisa,M., Omata,T., Sugiura,M. and Sugita,M.
     TITLE     Complete nucleotide sequence of the freshwater unicellular
               cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene
               content and organization
     JOURNAL   (er) Photosyn. Res. (2007) In press
      PUBMED   17211581
   REFERENCE   2  (bases 1 to 2696255)
     AUTHORS   Maeda,S., Sugita,C., Sugita,M. and Omata,T.
     TITLE     A new class of signal transducer in His-Asp phosphorelay systems
     JOURNAL   J. Biol. Chem. 281 (49), 37868-37876 (2006)
      PUBMED   17040912
   REFERENCE   3  (bases 1 to 2696255)
     AUTHORS   Takai,N., Nakajima,M., Oyama,T., Kito,R., Sugita,C., Sugita,M.,
               Kondo,T. and Iwasaki,H.
     TITLE     A KaiC-associating SasA-RpaA two-component regulatory system as a
               major circadian timing mediator in cyanobacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (32), 12109-12114 (2006)
      PUBMED   16882723
   REFERENCE   4  (bases 1 to 2696255)
     AUTHORS   Maeda,S., Sugita,C., Sugita,M. and Omata,T.
     TITLE     Latent nitrate transport activity of a novel sulfate permease-like
               protein of the cyanobacterium Synechococcus elongatus
     JOURNAL   J. Biol. Chem. 281 (9), 5869-5876 (2006)
      PUBMED   16407232
   REFERENCE   5  (bases 1 to 2696255)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   6  (bases 1 to 2696255)
     AUTHORS   Sugita,M. and Sugita,C.
     TITLE     Direct Submission
     JOURNAL   Submitted (10-DEC-2004) Mamoru Sugita, Center for Gene Research,
               Nagoya University; Chikusaku Furo-cho, Nagoya, Aichi, 464-8602,
               Japan (E-mail:sugita@gene.nagoya-u.ac.jp, Tel:81-52-789-3080,
               Fax:81-52-789-3080)
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AP008231.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
23767	23838	-	72	56750010	sycRNA001_c	-	^{01 Gly tRNA}
123823	123894	-	72	56750010	sycRNA002_c	-	^{10 Lys tRNA}
137979	138183	-	205	56750010	sycRNA003_c	-	6Sa RNA
199481	199562	+	82	56750010	sycRNA004_d	-	^{15 Leu tRNA}
372254	372325	+	72	56750010	sycRNA005_d	-	^{13 Val tRNA}
445763	445836	-	74	56750010	sycRNA006_c	-	^{03 Pro tRNA}
450030	450103	+	74	56750010	sycRNA007_d	-	^{03 Pro tRNA}
631076	631466	+	391	56750010	sycRNA008_d	-	tmRNA
697493	697564	-	72	56750010	sycRNA009_c	-	^{12 Thr tRNA}
697575	697656	-	82	56750010	sycRNA010_c	-	^{18 Tyr tRNA}
712463	712534	-	72	56750010	sycRNA011_c	-	^{12 Thr tRNA}
909561	909644	-	84	56750010	sycRNA012_c	-	^{15 Leu tRNA}
911178	911261	+	84	56750010	sycRNA013_d	-	^{15 Leu tRNA}
947359	947430	-	72	56750010	sycRNA014_c	-	^{13 Val tRNA}
1000429	1000500	-	72	56750010	sycRNA015_c	-	^{05 Gln tRNA}
1033090	1033161	-	72	56750010	sycRNA016_c	-	^{16 Met tRNA}
1047189	1047308	-	120	56750010	sycRNA017_c	-	5S ribosomal RNA
1047378	1050255	-	2878	56750010	sycRNA018_c	-	23S ribosomal RNA
1050460	1050532	-	73	56750010	sycRNA019_c	-	^{02 Ala tRNA}
1050566	1050639	-	74	56750010	sycRNA020_c	-	^{14 Ile tRNA}
1050801	1052289	-	1489	56750010	sycRNA021_c	-	16S ribosomal RNA
1065591	1065661	-	71	56750010	sycRNA022_c	-	^{01 Gly tRNA}
1195896	1195969	+	74	56750010	sycRNA023_d	-	^{11 Arg tRNA}
1216906	1216955	-	50	56750010	sycRNA024_c	-	^{15 Leu tRNA}
1217196	1217229	-	34	56750010	sycRNA024_c	-	^{15 Leu tRNA}
1332652	1332724	+	73	56750010	sycRNA025_d	-	^{02 Ala tRNA}
1400885	1400958	-	74	56750010	sycRNA026_c	-	^{03 Pro tRNA}
1454275	1454351	-	77	56750010	sycRNA027_c	-	^{16 Met tRNA}
1496872	1496942	-	71	56750010	sycRNA028_c	-	^{19 Cys tRNA}
1499530	1499600	-	71	56750010	sycRNA029_c	-	^{19 Cys tRNA}
1533086	1533157	+	72	56750010	sycRNA030_d	-	^{07 Asn tRNA}
1640108	1640180	+	73	56750010	sycRNA031_d	-	^{16 Met tRNA}
1649862	1649948	+	87	56750010	sycRNA032_d	-	^{08 Ser tRNA}
1656455	1657943	+	1489	56750010	sycRNA033_d	-	16S ribosomal RNA
1658105	1658178	+	74	56750010	sycRNA034_d	-	^{14 Ile tRNA}
1658212	1658284	+	73	56750010	sycRNA035_d	-	^{02 Ala tRNA}
1658489	1661366	+	2878	56750010	sycRNA036_d	-	23S ribosomal RNA
1661436	1661555	+	120	56750010	sycRNA037_d	-	5S ribosomal RNA
1693622	1693695	-	74	56750010	sycRNA038_c	-	^{06 Asp tRNA}
1693902	1693974	-	73	56750010	sycRNA039_c	-	^{20 Trp tRNA}
1720128	1720200	-	73	56750010	sycRNA040_c	-	^{02 Ala tRNA}
1778303	1778389	-	87	56750010	sycRNA041_c	-	^{08 Ser tRNA}
1802971	1803052	-	82	56750010	sycRNA042_c	-	^{15 Leu tRNA}
1838442	1838514	-	73	56750010	sycRNA043_c	-	^{17 Phe tRNA}
1869031	1869124	+	94	56750010	sycRNA044_d	-	signal recognition particle RNA
1883462	1883534	-	73	56750010	sycRNA045_c	-	^{09 His tRNA}
1937495	1937568	+	74	56750010	sycRNA046_d	-	^{11 Arg tRNA}
1973374	1973446	-	73	56750010	sycRNA047_c	-	^{11 Arg tRNA}
1998647	1998719	-	73	56750010	sycRNA048_c	-	^{11 Arg tRNA}
2007303	2007374	+	72	56750010	sycRNA049_d	-	^{01 Gly tRNA}
2035741	2035829	+	89	56750010	sycRNA050_d	-	^{08 Ser tRNA}
2120875	2120947	-	73	56750010	sycRNA051_c	-	^{04 Glu tRNA}
2231507	2231578	+	72	56750010	sycRNA052_d	-	^{12 Thr tRNA}
2291672	2291756	-	85	56750010	sycRNA053_c	-	^{08 Ser tRNA}
2603729	2604112	-	384	56750010	sycRNA054_c	-	ribonuclease P RNA component
2654471	2654542	+	72	56750010	sycRNA055_d	-	^{13 Val tRNA}