Геном прокариот/Материалы:NC 006582

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_006582            4303871 bp    DNA     circular BCT 02-DEC-2005
   DEFINITION  Bacillus clausii KSM-K16, complete genome.
   ACCESSION   NC_006582
   VERSION     NC_006582.1  GI:56961782
   KEYWORDS    .
   SOURCE      Bacillus clausii KSM-K16
     ORGANISM  Bacillus clausii KSM-K16
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
   REFERENCE   1
     AUTHORS   Shirai,T., Suzuki,A., Yamane,T., Ashida,T., Kobayashi,T., Hitomi,J.
               and Ito,S.
     TITLE     High-resolution crystal structure of M-protease: phylogeny aided
               analysis of the high-alkaline adaptation mechanism
     JOURNAL   Protein Eng. 10 (6), 627-634 (1997)
      PUBMED   9278275
   REFERENCE   2
     AUTHORS   Kobayashi,T., Hakamada,Y., Adachi,S., Hitomi,J., Yoshimatsu,T.,
               Koike,K., Kawai,S. and Ito,S.
     TITLE     Purification and properties of an alkaline protease from
               alkalophilic Bacillus sp. KSM-K16
     JOURNAL   Appl. Microbiol. Biotechnol. 43 (3), 473-481 (1995)
      PUBMED   7632397
   REFERENCE   3
     AUTHORS   Hakamada,Y., Kobayashi,T., Hitomi,J., Kawai,S. and Ito,S.
     TITLE     Molecular cloning and nucleotide sequence of the gene for an
               alkaline protease from the alkalophilic Bacillus sp. KSM-K16
     JOURNAL   J. Ferment. Bioeng. 78, 105-108 (1994)
   REFERENCE   4
     AUTHORS   Takaki,Y., Kageyama,Y., Shimamura,S., Suzuki,H., Nishi,S.,
               Hatada,Y., Kawai,S., Ito,S. and Horikoshi,K.
     TITLE     The complete genome sequence of the alkaliphilic Bacillus clausii
               KSM-K16
     JOURNAL   Unpublished
   REFERENCE   5  (bases 1 to 4303871)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JAN-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   6  (bases 1 to 4303871)
     AUTHORS   Takaki,Y., Kageyama,Y., Shimamura,S., Suzuki,H., Nishi,S.,
               Hatada,Y., Kawai,S., Ito,S. and Horikoshi,K.
     TITLE     Direct Submission
     JOURNAL   Submitted (19-OCT-2003) Biological Science Laboratories, Kao
               Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, Tochigi
               321-3497,, Japan
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AP006627.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11675	13227	+	1553	56961782	ABCr01	-	ribosomal RNA-16S
13559	16361	+	2803	56961782	ABCr02	-	ribosomal RNA-23S
16733	16848	+	116	56961782	ABCr03	-	ribosomal RNA-5S
52364	53916	+	1553	56961782	ABCr04	-	ribosomal RNA-16S
54372	57174	+	2803	56961782	ABCr05	-	ribosomal RNA-23S
57448	57563	+	116	56961782	ABCr06	-	ribosomal RNA-5S
115582	115655	+	74	56961782	ABCt01	-	^{16 Met tRNA}
136407	137957	+	1551	56961782	ABCr07	-	ribosomal RNA-16S
138412	141215	+	2804	56961782	ABCr08	-	ribosomal RNA-23S
141700	141815	+	116	56961782	ABCr09	-	ribosomal RNA-5S
141833	141908	+	76	56961782	ABCt02	-	^{13 Val tRNA}
142043	142118	+	76	56961782	ABCt03	-	^{12 Thr tRNA}
142137	142212	+	76	56961782	ABCt04	-	^{10 Lys tRNA}
142225	142307	+	83	56961782	ABCt05	-	^{15 Leu tRNA}
142327	142398	+	72	56961782	ABCt06	-	^{01 Gly tRNA}
142418	142503	+	86	56961782	ABCt07	-	^{15 Leu tRNA}
142523	142599	+	77	56961782	ABCt08	-	^{11 Arg tRNA}
142604	142680	+	77	56961782	ABCt09	-	^{03 Pro tRNA}
142688	142763	+	76	56961782	ABCt10	-	^{02 Ala tRNA}
142939	144489	+	1551	56961782	ABCr10	-	ribosomal RNA-16S
144821	147624	+	2804	56961782	ABCr11	-	ribosomal RNA-23S
148117	148232	+	116	56961782	ABCr12	-	ribosomal RNA-5S
218075	219625	+	1551	56961782	ABCr13	-	ribosomal RNA-16S
220080	222882	+	2803	56961782	ABCr14	-	ribosomal RNA-23S
223378	223493	+	116	56961782	ABCr15	-	ribosomal RNA-5S
223516	223590	+	75	56961782	ABCt11	-	^{07 Asn tRNA}
223598	223670	+	73	56961782	ABCt12	-	^{12 Thr tRNA}
263085	263156	+	72	56961782	ABCt13	-	^{04 Glu tRNA}
263229	263340	+	112	56961782	ABCr16	-	ribosomal RNA-5S
263454	263529	+	76	56961782	ABCt14	-	^{13 Val tRNA}
263553	263637	+	85	56961782	ABCt15	-	^{18 Tyr tRNA}
263650	263724	+	75	56961782	ABCt16	-	^{05 Gln tRNA}
263728	263800	+	73	56961782	ABCt17	-	^{10 Lys tRNA}
263849	263924	+	76	56961782	ABCt18	-	^{02 Ala tRNA}
890651	890725	+	75	56961782	ABCt19	-	^{07 Asn tRNA}
890727	890814	+	88	56961782	ABCt20	-	^{08 Ser tRNA}
890822	890893	+	72	56961782	ABCt21	-	^{04 Glu tRNA}
891276	891351	+	76	56961782	ABCt22	-	^{13 Val tRNA}
891359	891435	+	77	56961782	ABCt23	-	^{06 Asp tRNA}
891461	891546	+	86	56961782	ABCt24	-	^{15 Leu tRNA}
891553	891637	+	85	56961782	ABCt25	-	^{15 Leu tRNA}
932932	933008	+	77	56961782	ABCt26	-	^{11 Arg tRNA}
933012	933088	+	77	56961782	ABCt27	-	^{03 Pro tRNA}
933276	933349	+	74	56961782	ABCt28	-	^{01 Gly tRNA}
933381	933457	+	77	56961782	ABCt29	-	^{14 Ile tRNA}
933638	935188	+	1551	56961782	ABCr17	-	ribosomal RNA-16S
935504	935580	+	77	56961782	ABCt30	-	^{14 Ile tRNA}
935596	935671	+	76	56961782	ABCt31	-	^{02 Ala tRNA}
935921	938723	+	2803	56961782	ABCr18	-	ribosomal RNA-23S
939096	939211	+	116	56961782	ABCr19	-	ribosomal RNA-5S
943808	943881	+	74	56961782	ABCt32	-	^{16 Met tRNA}
1440581	1442131	+	1551	56961782	ABCr20	-	ribosomal RNA-16S
1442780	1445583	+	2804	56961782	ABCr21	-	ribosomal RNA-23S
1446077	1446192	+	116	56961782	ABCr22	-	ribosomal RNA-5S
1446204	1446278	+	75	56961782	ABCt33	-	^{07 Asn tRNA}
1446282	1446375	+	94	56961782	ABCt34	-	^{08 Ser tRNA}
1446388	1446462	+	75	56961782	ABCt35	-	^{04 Glu tRNA}
1446499	1446574	+	76	56961782	ABCt36	-	^{13 Val tRNA}
1447011	1447087	+	77	56961782	ABCt37	-	^{16 Met tRNA}
1447105	1447181	+	77	56961782	ABCt38	-	^{06 Asp tRNA}
1447194	1447269	+	76	56961782	ABCt39	-	^{17 Phe tRNA}
1447283	1447358	+	76	56961782	ABCt40	-	^{12 Thr tRNA}
1447423	1447507	+	85	56961782	ABCt41	-	^{18 Tyr tRNA}
1447515	1447588	+	74	56961782	ABCt42	-	^{20 Trp tRNA}
1447619	1447695	+	77	56961782	ABCt43	-	^{09 His tRNA}
1447708	1447781	+	74	56961782	ABCt44	-	^{05 Gln tRNA}
1447785	1447856	+	72	56961782	ABCt45	-	^{01 Gly tRNA}
1447868	1447941	+	74	56961782	ABCt46	-	^{19 Cys tRNA}
1447971	1448056	+	86	56961782	ABCt47	-	^{15 Leu tRNA}
1448083	1448156	+	74	56961782	ABCt48	-	^{11 Arg tRNA}
1450811	1450892	+	82	56961782	ABCt49	-	^{15 Leu tRNA}
1841973	1842047	+	75	56961782	ABCt50	-	^{07 Asn tRNA}
1842050	1842126	+	77	56961782	ABCt51	-	^{16 Met tRNA}
1842157	1842232	+	76	56961782	ABCt52	-	^{09 His tRNA}
1842250	1842323	+	74	56961782	ABCt53	-	^{16 Met tRNA}
1842328	1842417	+	90	56961782	ABCt54	-	^{08 Ser tRNA}
2571148	2571220	-	73	56961782	ABCt55	-	^{13 Val tRNA}
2573822	2573894	-	73	56961782	ABCt56	-	^{11 Arg tRNA}
2626662	2626745	-	84	56961782	ABCt57	-	^{15 Leu tRNA}
2626772	2626862	-	91	56961782	ABCt58	-	^{08 Ser tRNA}
2626894	2626970	-	77	56961782	ABCt59	-	^{14 Ile tRNA}
2626986	2627056	-	71	56961782	ABCt60	-	^{01 Gly tRNA}
2627239	2627310	-	72	56961782	ABCt61	-	^{01 Gly tRNA}
2627314	2627388	-	75	56961782	ABCt62	-	^{05 Gln tRNA}
2627394	2627470	-	77	56961782	ABCt63	-	^{16 Met tRNA}
2627752	2627844	-	93	56961782	ABCt64	-	^{08 Ser tRNA}
2627852	2627924	-	73	56961782	ABCt65	-	^{02 Ala tRNA}
2781202	2781278	-	77	56961782	ABCt66	-	^{11 Arg tRNA}
2781284	2781357	-	74	56961782	ABCt67	-	^{01 Gly tRNA}
3031151	3031223	-	73	56961782	ABCt68	-	^{02 Ala tRNA}
3447112	3447185	+	74	56961782	ABCt69	-	^{11 Arg tRNA}
4281481	4281553	-	73	56961782	ABCt70	-	^{12 Thr tRNA}
4281557	4281632	-	76	56961782	ABCt71	-	^{17 Phe tRNA}
4281669	4281745	-	77	56961782	ABCt72	-	^{06 Asp tRNA}
4281769	4281840	-	72	56961782	ABCt73	-	^{04 Glu tRNA}
4281851	4281926	-	76	56961782	ABCt74	-	^{10 Lys tRNA}