Материалы:NC 007384

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007384            4825265 bp    DNA     circular BCT 23-JAN-2007
   DEFINITION  Shigella sonnei Ss046, complete genome.
   ACCESSION   NC_007384
   VERSION     NC_007384.1  GI:74310614
   KEYWORDS    .
   SOURCE      Shigella sonnei Ss046
     ORGANISM  Shigella sonnei Ss046
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4825265)
     AUTHORS   Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X.,
               Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S.,
               Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y.,
               Qiang,B., Hou,Y., Yu,J. and Jin,Q.
     TITLE     Genome dynamics and diversity of Shigella species, the etiologic
               agents of bacillary dysentery
     JOURNAL   Nucleic Acids Res. 33 (19), 6445-6458 (2005)
      PUBMED   16275786
   REFERENCE   2  (bases 1 to 4825265)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-SEP-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4825265)
     AUTHORS   Jin,Q., Yang,F., Yang,J., Jiang,Y., Yan,Y., Chen,L., Zhang,X.,
               Peng,J., Tang,X., Xiong,Z., Nie,H., Dong,J., Xue,Y., Xu,X., Zhu,Y.,
               Shen,Y., Qiang,B. and Hou,Y.
     TITLE     Direct Submission
     JOURNAL   Submitted (29-OCT-2004) State Key Laboratory for Moleclular
               Virology and Genetic Engineering, Microbial Genome Center of
               Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
               Beijing 100176, P. R. China
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000038.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
240084	241625	+	1542	74310614	SSON_0215	-	16S ribosomal RNA
241694	241770	+	77	74310614	SSON_0216	-	^{14 Ile tRNA}
241813	241888	+	76	74310614	SSON_0217	-	^{02 Ala tRNA}
242072	244975	+	2904	74310614	SSON_0218	-	23S ribosomal RNA
245069	245187	+	119	74310614	SSON_0219	-	5S ribosomal RNA
245365	245441	+	77	74310614	SSON_0220	-	^{06 Asp tRNA}
253369	253445	+	77	74310614	SSON_0230	-	^{06 Asp tRNA}
314849	314924	+	76	74310614	SSON_0286	-	^{12 Thr tRNA}
539681	539757	+	77	74310614	SSON_0511	-	^{11 Arg tRNA}
658535	658609	-	75	74310614	SSON_0618	-	^{05 Gln tRNA}
658646	658720	-	75	74310614	SSON_0619	-	^{05 Gln tRNA}
658769	658845	-	77	74310614	SSON_0621	-	^{16 Met tRNA}
658861	658935	-	75	74310614	SSON_0622	-	^{05 Gln tRNA}
658970	659044	-	75	74310614	SSON_0624	-	^{05 Gln tRNA}
659068	659152	-	85	74310614	SSON_0625	-	^{15 Leu tRNA}
659161	659237	-	77	74310614	SSON_0626	-	^{16 Met tRNA}
740953	741028	+	76	74310614	SSON_0695	-	^{10 Lys tRNA}
741178	741253	+	76	74310614	SSON_0696	-	^{13 Val tRNA}
741257	741332	+	76	74310614	SSON_0697	-	^{10 Lys tRNA}
741381	741456	+	76	74310614	SSON_0698	-	^{10 Lys tRNA}
741490	741565	+	76	74310614	SSON_0699	-	^{10 Lys tRNA}
939703	939790	-	88	74310614	SSON_0884	-	^{08 Ser tRNA}
1050493	1050580	-	88	74310614	SSON_0976	-	^{08 Ser tRNA}
1125195	1125282	-	88	74310614	SSON_1041	-	^{08 Ser tRNA}
1285232	1285307	+	76	74310614	SSON_1207	-	^{01 Gly tRNA}
1285362	1285435	+	74	74310614	SSON_1208	-	^{19 Cys tRNA}
1285448	1285534	+	87	74310614	SSON_1209	-	^{15 Leu tRNA}
1336980	1337056	-	77	74310614	SSON_1258	-	^{11 Arg tRNA}
1337157	1337232	-	76	74310614	SSON_1259	-	^{16 Met tRNA}
1565385	1565461	-	77	74310614	SSON_1490	-	^{13 Val tRNA}
1565466	1565542	-	77	74310614	SSON_1491	-	^{13 Val tRNA}
1874677	1874751	-	75	74310614	SSON_1773	-	^{01 Gly tRNA}
1874755	1874830	-	76	74310614	SSON_1774	-	^{12 Thr tRNA}
1874833	1874909	-	77	74310614	SSON_1775	-	^{11 Arg tRNA}
1874911	1874987	-	77	74310614	SSON_1776	-	^{16 Met tRNA}
1995713	1995789	-	77	74310614	SSON_1896	-	^{11 Arg tRNA}
1995803	1995879	-	77	74310614	SSON_1897	-	^{11 Arg tRNA}
1995887	1995962	-	76	74310614	SSON_1898	-	^{16 Met tRNA}
2047907	2047991	+	85	74310614	SSON_1948	-	^{18 Tyr tRNA}
2127532	2127621	-	90	74310614	SSON_2034	-	^{08 Ser tRNA}
2128613	2128688	+	76	74310614	SSON_2036	-	^{07 Asn tRNA}
2142989	2143064	-	76	74310614	SSON_2043	-	^{07 Asn tRNA}
2144813	2144888	+	76	74310614	SSON_2045	-	^{07 Asn tRNA}
2150262	2150337	+	76	74310614	SSON_2050	-	^{07 Asn tRNA}
2358939	2359015	+	77	74310614	SSON_2245	-	^{03 Pro tRNA}
2540386	2540460	+	75	74310614	SSON_2405	-	^{11 Arg tRNA}
2630627	2630702	-	76	74310614	SSON_2487	-	^{02 Ala tRNA}
2630742	2630817	-	76	74310614	SSON_2488	-	^{02 Ala tRNA}
2633517	2633592	+	76	74310614	SSON_2492	-	^{13 Val tRNA}
2633638	2633713	+	76	74310614	SSON_2493	-	^{13 Val tRNA}
2633760	2633835	+	76	74310614	SSON_2494	-	^{13 Val tRNA}
2633840	2633915	+	76	74310614	SSON_2495	-	^{10 Lys tRNA}
2872403	2872521	-	119	74310614	SSON_2714	-	5S ribosomal RNA
2872615	2875518	-	2904	74310614	SSON_2715	-	23S ribosomal RNA
2875712	2875787	-	76	74310614	SSON_2716	-	^{04 Glu tRNA}
2875873	2877414	-	1542	74310614	SSON_2717	-	16S ribosomal RNA
2935018	2935092	-	75	74310614	SSON_2785	-	^{01 Gly tRNA}
2935096	2935171	-	76	74310614	SSON_2786	-	^{12 Thr tRNA}
2935174	2935250	-	77	74310614	SSON_2787	-	^{11 Arg tRNA}
2935252	2935328	-	77	74310614	SSON_2788	-	^{16 Met tRNA}
2945408	2945483	+	76	74310614	SSON_2800	-	^{16 Met tRNA}
2979008	2979084	-	77	74310614	SSON_2835	-	^{11 Arg tRNA}
2979283	2979359	-	77	74310614	SSON_2836	-	^{11 Arg tRNA}
2979423	2979499	-	77	74310614	SSON_2837	-	^{11 Arg tRNA}
2979563	2979639	-	77	74310614	SSON_2838	-	^{11 Arg tRNA}
2979643	2979735	-	93	74310614	SSON_2839	-	^{08 Ser tRNA}
3117001	3117077	+	77	74310614	SSON_2971	-	^{16 Met tRNA}
3117111	3117187	+	77	74310614	SSON_2972	-	^{16 Met tRNA}
3117221	3117297	+	77	74310614	SSON_2973	-	^{16 Met tRNA}
3168683	3168752	-	70	74310614	SSON_3015	-	^{01 Gly tRNA}
3371268	3371343	+	76	74310614	SSON_3207	-	^{16 Met tRNA}
3403158	3403233	-	76	74310614	SSON_3228	-	^{17 Phe tRNA}
3495151	3495227	-	77	74310614	SSON_3317	-	^{16 Met tRNA}
3501145	3501231	-	87	74310614	SSON_3322	-	^{15 Leu tRNA}
3596216	3596331	-	116	74310614	SSON_3413	-	5S ribosomal RNA
3596372	3596447	-	76	74310614	SSON_3414	-	^{12 Thr tRNA}
3596460	3596578	-	119	74310614	SSON_3415	-	5S ribosomal RNA
3596672	3599575	-	2904	74310614	SSON_3416	-	23S ribosomal RNA
3599759	3599834	-	76	74310614	SSON_3417	-	^{02 Ala tRNA}
3599877	3599953	-	77	74310614	SSON_3418	-	^{14 Ile tRNA}
3600022	3601563	-	1542	74310614	SSON_3419	-	16S ribosomal RNA
3928571	3928665	-	95	74310614	SSON_3745	-	Sec tRNA
4038560	4038636	+	77	74310614	SSON_3845	-	^{03 Pro tRNA}
4148249	4149790	+	1542	74310614	SSON_3926	-	16S ribosomal RNA
4149876	4149951	+	76	74310614	SSON_3927	-	^{04 Glu tRNA}
4150145	4153048	+	2904	74310614	SSON_3928	-	23S ribosomal RNA
4153142	4153260	+	119	74310614	SSON_3929	-	5S ribosomal RNA
4153313	4153389	+	77	74310614	SSON_3930	-	^{06 Asp tRNA}
4153398	4153473	+	76	74310614	SSON_3931	-	^{20 Trp tRNA}
4193063	4193139	+	77	74310614	SSON_3969	-	^{11 Arg tRNA}
4193198	4193273	+	76	74310614	SSON_3970	-	^{09 His tRNA}
4193294	4193380	+	87	74310614	SSON_3971	-	^{15 Leu tRNA}
4193423	4193499	+	77	74310614	SSON_3972	-	^{03 Pro tRNA}
4252785	4254326	+	1542	74310614	SSON_4024	-	16S ribosomal RNA
4254412	4254487	+	76	74310614	SSON_4025	-	^{04 Glu tRNA}
4254681	4257584	+	2904	74310614	SSON_4026	-	23S ribosomal RNA
4257678	4257796	+	119	74310614	SSON_4027	-	5S ribosomal RNA
4386044	4387585	+	1542	74310614	SSON_4141	-	16S ribosomal RNA
4387671	4387746	+	76	74310614	SSON_4142	-	^{04 Glu tRNA}
4387940	4390843	+	2904	74310614	SSON_4143	-	23S ribosomal RNA
4390937	4391055	+	119	74310614	SSON_4144	-	5S ribosomal RNA
4394519	4394594	+	76	74310614	SSON_4149	-	^{12 Thr tRNA}
4394603	4394687	+	85	74310614	SSON_4150	-	^{18 Tyr tRNA}
4394804	4394878	+	75	74310614	SSON_4151	-	^{01 Gly tRNA}
4394885	4394960	+	76	74310614	SSON_4152	-	^{12 Thr tRNA}
4426338	4427879	+	1542	74310614	SSON_4180	-	16S ribosomal RNA
4427965	4428040	+	76	74310614	SSON_4181	-	^{04 Glu tRNA}
4428234	4431137	+	2904	74310614	SSON_4182	-	23S ribosomal RNA
4431231	4431349	+	119	74310614	SSON_4183	-	5S ribosomal RNA
4588285	4588360	-	76	74310614	SSON_4317	-	^{17 Phe tRNA}
4619087	4619162	+	76	74310614	SSON_4348	-	^{01 Gly tRNA}
4619320	4619395	+	76	74310614	SSON_4349	-	^{01 Gly tRNA}
4619431	4619506	+	76	74310614	SSON_4350	-	^{01 Gly tRNA}
4726868	4726952	+	85	74310614	SSON_4455	-	^{15 Leu tRNA}
4790431	4790517	-	87	74310614	SSON_4516	-	^{15 Leu tRNA}
4790552	4790638	-	87	74310614	SSON_4517	-	^{15 Leu tRNA}
4790667	4790753	-	87	74310614	SSON_4518	-	^{15 Leu tRNA}
4790788	4790874	-	87	74310614	SSON_4519	-	^{15 Leu tRNA}
4790903	4790989	-	87	74310614	SSON_4520	-	^{15 Leu tRNA}