Геном прокариот/Материалы:NC 007404

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007404            2909809 bp    DNA     circular BCT 07-FEB-2006
   DEFINITION  Thiobacillus denitrificans ATCC 25259, complete genome.
   ACCESSION   NC_007404
   VERSION     NC_007404.1  GI:74316018
   KEYWORDS    .
   SOURCE      Thiobacillus denitrificans ATCC 25259
     ORGANISM  Thiobacillus denitrificans ATCC 25259
               Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales;
               Hydrogenophilaceae; Thiobacillus.
   REFERENCE   1  (bases 1 to 2909809)
     AUTHORS   Beller,H.R., Chain,P.S., Letain,T.E., Chakicherla,A., Larimer,F.W.,
               Richardson,P.M., Coleman,M.A., Wood,A.P. and Kelly,D.P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The Genome Sequence of the Obligately Chemolithoautotrophic,
               Facultatively Anaerobic Bacterium Thiobacillus denitrificans
     JOURNAL   J. Bacteriol. 188 (4), 1473-1488 (2006)
      PUBMED   16452431
   REFERENCE   2  (bases 1 to 2909809)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-SEP-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2909809)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyripides,N., Lykidis,A. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000116.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Harry Beller (beller2@llnl.gov)
               Bacteria available from ATCC: ATCC 25259
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
90806	90881	-	76	74316018	Tbd_R0001	-	^{17 Phe tRNA}
116736	116972	+	237	74316018	Tbd_R0002	-	RNA component of RNaseP
157660	157736	+	77	74316018	Tbd_R0003	-	^{11 Arg tRNA}
415383	415457	+	75	74316018	Tbd_R0004	-	^{05 Gln tRNA}
418981	419065	+	85	74316018	Tbd_R0005	-	^{18 Tyr tRNA}
419145	419218	+	74	74316018	Tbd_R0006	-	^{01 Gly tRNA}
419255	419329	+	75	74316018	Tbd_R0007	-	^{12 Thr tRNA}
420743	420818	+	76	74316018	Tbd_R0008	-	^{20 Trp tRNA}
478097	479599	+	1503	74316018	Tbd_R0009	-	16S ribosomal RNA
479682	479758	+	77	74316018	Tbd_R0010	-	^{14 Ile tRNA}
479898	479973	+	76	74316018	Tbd_R0011	-	^{02 Ala tRNA}
480436	483317	+	2882	74316018	Tbd_R0012	-	23S ribosomal RNA
483460	483571	+	112	74316018	Tbd_R0013	-	5S ribosomal RNA
544561	544659	+	99	74316018	Tbd_R0014	-	SRP RNA; RNA component of signal recognitionparticle
636133	636219	-	87	74316018	Tbd_R0015	-	^{15 Leu tRNA}
729015	729090	-	76	74316018	Tbd_R0016	-	^{09 His tRNA}
729127	729203	-	77	74316018	Tbd_R0017	-	^{11 Arg tRNA}
729235	729311	-	77	74316018	Tbd_R0018	-	^{03 Pro tRNA}
741047	741133	-	87	74316018	Tbd_R0019	-	^{15 Leu tRNA}
741159	741232	-	74	74316018	Tbd_R0020	-	^{19 Cys tRNA}
741302	741377	-	76	74316018	Tbd_R0021	-	^{01 Gly tRNA}
913834	913910	-	77	74316018	Tbd_R0022	-	^{03 Pro tRNA}
1004945	1005311	-	367	74316018	Tbd_R0023	-	tmRNA
1032021	1032097	-	77	74316018	Tbd_R0024	-	^{11 Arg tRNA}
1032154	1032247	-	94	74316018	Tbd_R0025	-	^{08 Ser tRNA}
1075594	1075670	+	77	74316018	Tbd_R0026	-	^{13 Val tRNA}
1083358	1083434	+	77	74316018	Tbd_R0027	-	^{03 Pro tRNA}
1196796	1196880	+	85	74316018	Tbd_R0028	-	^{15 Leu tRNA}
1289997	1290086	+	90	74316018	Tbd_R0029	-	^{08 Ser tRNA}
1621594	1621684	-	91	74316018	Tbd_R0030	-	^{08 Ser tRNA}
1655634	1655709	+	76	74316018	Tbd_R0031	-	^{07 Asn tRNA}
1760787	1760863	-	77	74316018	Tbd_R0032	-	^{06 Asp tRNA}
1760909	1760984	-	76	74316018	Tbd_R0033	-	^{13 Val tRNA}
1787407	1787491	-	85	74316018	Tbd_R0034	-	^{15 Leu tRNA}
1819039	1819113	-	75	74316018	Tbd_R0035	-	^{13 Val tRNA}
1820647	1820722	+	76	74316018	Tbd_R0036	-	^{12 Thr tRNA}
1859921	1860032	-	112	74316018	Tbd_R0037	-	5S ribosomal RNA
1860219	1863117	-	2899	74316018	Tbd_R0038	-	23S ribosomal RNA
1863553	1863628	-	76	74316018	Tbd_R0039	-	^{02 Ala tRNA}
1863768	1863844	-	77	74316018	Tbd_R0040	-	^{14 Ile tRNA}
1863920	1865429	-	1510	74316018	Tbd_R0041	-	16S ribosomal RNA
1865716	1865792	-	77	74316018	Tbd_R0042	-	^{16 Met tRNA}
1929025	1929100	-	76	74316018	Tbd_R0043	-	^{12 Thr tRNA}
2087047	2087122	+	76	74316018	Tbd_R0044	-	^{02 Ala tRNA}
2087354	2087429	+	76	74316018	Tbd_R0045	-	^{04 Glu tRNA}
2093605	2093680	-	76	74316018	Tbd_R0046	-	^{11 Arg tRNA}
2166984	2167070	-	87	74316018	Tbd_R0047	-	^{15 Leu tRNA}
2214978	2215051	+	74	74316018	Tbd_R0048	-	^{01 Gly tRNA}
2281490	2281565	-	76	74316018	Tbd_R0049	-	^{10 Lys tRNA}
2462035	2462111	+	77	74316018	Tbd_R0050	-	^{16 Met tRNA}
2789044	2789120	-	77	74316018	Tbd_R0051	-	^{16 Met tRNA}
2812950	2813025	+	76	74316018	Tbd_R0052	-	^{02 Ala tRNA}