Геном прокариот/Материалы:NC 007406

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007406            3402093 bp    DNA     circular BCT 19-OCT-2006
   DEFINITION  Nitrobacter winogradskyi Nb-255, complete genome.
   ACCESSION   NC_007406
   VERSION     NC_007406.1  GI:75674199
   KEYWORDS    .
   SOURCE      Nitrobacter winogradskyi Nb-255
     ORGANISM  Nitrobacter winogradskyi Nb-255
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Nitrobacter.
   REFERENCE   1  (bases 1 to 3402093)
     AUTHORS   Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L.,
               Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J.,
               Arp,D.J. and Hickey,W.J.
     TITLE     Genome sequence of the chemolithoautotrophic nitrite-oxidizing
               bacterium Nitrobacter winogradskyi Nb-255
     JOURNAL   Appl. Environ. Microbiol. 72 (3), 2050-2063 (2006)
      PUBMED   16517654
   REFERENCE   2  (bases 1 to 3402093)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Nitrobacter winogradskyi Nb-255
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 3402093)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 3402093)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (01-SEP-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000115.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
87473	87547	-	75	75674199	Nwi_R0001	-	^{01 Gly tRNA}
167120	167193	+	74	75674199	Nwi_R0002	-	^{01 Gly tRNA}
194684	194770	+	87	75674199	Nwi_R0003	-	^{15 Leu tRNA}
241612	241687	+	76	75674199	Nwi_R0004	-	^{02 Ala tRNA}
274519	274593	-	75	75674199	Nwi_R0005	-	^{12 Thr tRNA}
310616	310691	-	76	75674199	Nwi_R0006	-	^{17 Phe tRNA}
416069	416171	+	103	75674199	Nwi_R0007	-	SRP RNA; RNA component of signal recognitionparticle
494086	494175	-	90	75674199	Nwi_R0008	-	^{08 Ser tRNA}
512678	512754	+	77	75674199	Nwi_R0009	-	^{11 Arg tRNA}
533217	533292	+	76	75674199	Nwi_R0010	-	^{12 Thr tRNA}
535345	535420	-	76	75674199	Nwi_R0011	-	^{02 Ala tRNA}
589505	589580	+	76	75674199	Nwi_R0012	-	^{16 Met tRNA}
638302	639791	+	1490	75674199	Nwi_R0013	-	16S ribosomal RNA
639999	640075	+	77	75674199	Nwi_R0014	-	^{14 Ile tRNA}
640108	640183	+	76	75674199	Nwi_R0015	-	^{02 Ala tRNA}
640614	643442	+	2829	75674199	Nwi_R0016	-	23S ribosomal RNA
643504	643618	+	115	75674199	Nwi_R0017	-	5S ribosomal RNA
684778	684854	+	77	75674199	Nwi_R0018	-	^{16 Met tRNA}
718800	718874	+	75	75674199	Nwi_R0019	-	^{05 Gln tRNA}
826066	826150	-	85	75674199	Nwi_R0020	-	^{15 Leu tRNA}
915544	915620	+	77	75674199	Nwi_R0021	-	^{16 Met tRNA}
1113523	1113599	+	77	75674199	Nwi_R0022	-	^{09 His tRNA}
1377955	1378028	+	74	75674199	Nwi_R0023	-	^{05 Gln tRNA}
1475662	1475737	-	76	75674199	Nwi_R0024	-	^{20 Trp tRNA}
1533855	1533932	+	78	75674199	Nwi_R0025	-	^{03 Pro tRNA}
1619556	1619645	+	90	75674199	Nwi_R0026	-	^{08 Ser tRNA}
1652754	1652827	-	74	75674199	Nwi_R0027	-	^{19 Cys tRNA}
1682382	1682458	+	77	75674199	Nwi_R0028	-	^{11 Arg tRNA}
1709371	1709448	+	78	75674199	Nwi_R0029	-	^{11 Arg tRNA}
1755655	1755731	-	77	75674199	Nwi_R0030	-	^{03 Pro tRNA}
1759786	1759860	+	75	75674199	Nwi_R0031	-	^{04 Glu tRNA}
1890319	1890403	-	85	75674199	Nwi_R0032	-	^{15 Leu tRNA}
1906243	1906319	+	77	75674199	Nwi_R0033	-	^{11 Arg tRNA}
1951048	1951122	+	75	75674199	Nwi_R0034	-	^{07 Asn tRNA}
1962421	1962496	+	76	75674199	Nwi_R0035	-	^{10 Lys tRNA}
2073336	2073412	-	77	75674199	Nwi_R0036	-	^{06 Asp tRNA}
2078266	2078342	+	77	75674199	Nwi_R0037	-	^{13 Val tRNA}
2085537	2085621	-	85	75674199	Nwi_R0038	-	^{15 Leu tRNA}
2121035	2121128	+	94	75674199	Nwi_R0039	-	^{08 Ser tRNA}
2244358	2244431	-	74	75674199	Nwi_R0040	-	^{01 Gly tRNA}
2246251	2246336	+	86	75674199	Nwi_R0041	-	^{18 Tyr tRNA}
2253607	2253681	+	75	75674199	Nwi_R0042	-	^{12 Thr tRNA}
2381182	2381270	-	89	75674199	Nwi_R0043	-	^{15 Leu tRNA}
2555231	2555306	-	76	75674199	Nwi_R0044	-	^{10 Lys tRNA}
2573201	2573521	+	321	75674199	Nwi_R0045	-	tmRNA
2654247	2654321	+	75	75674199	Nwi_R0046	-	^{04 Glu tRNA}
2671615	2671689	+	75	75674199	Nwi_R0047	-	Xaa tRNA
2672041	2672113	-	73	75674199	Nwi_R0048	-	Xaa tRNA
2681975	2682360	+	386	75674199	Nwi_R0049	-	RNA component of RNaseP
2928541	2928617	-	77	75674199	Nwi_R0050	-	^{03 Pro tRNA}
3069030	3069119	-	90	75674199	Nwi_R0051	-	^{08 Ser tRNA}
3180981	3181055	-	75	75674199	Nwi_R0052	-	^{13 Val tRNA}
3259630	3259704	+	75	75674199	Nwi_R0053	-	^{13 Val tRNA}
3342499	3342575	+	77	75674199	Nwi_R0054	-	^{11 Arg tRNA}
3397654	3397730	-	77	75674199	Nwi_R0055	-	^{11 Arg tRNA}