Материалы:NC 007481

Материал из Викиверситета
Вы находитесь в Инкубаторе
Это исходный материал (как правило загружен ботом)

Обработать/использовать материал

   LOCUS       NC_007481            3214944 bp    DNA     circular BCT 20-JAN-2006
   DEFINITION  Pseudoalteromonas haloplanktis TAC125 chromosome I, complete
               sequence.
   ACCESSION   NC_007481
   VERSION     NC_007481.1  GI:77358982
   KEYWORDS    .
   SOURCE      Pseudoalteromonas haloplanktis TAC125
     ORGANISM  Pseudoalteromonas haloplanktis TAC125
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Pseudoalteromonadaceae; Pseudoalteromonas.
   REFERENCE   1  (bases 1 to 3214944)
     AUTHORS   Medigue,C., Krin,E., Pascal,G., Barbe,V., Bernsel,A., Bertin,P.N.,
               Cheung,F., Cruveiller,S., D'Amico,S., Duilio,A., Fang,G.,
               Feller,G., Ho,C., Mangenot,S., Marino,G., Nilsson,J., Parrilli,E.,
               Rocha,E.P., Rouy,Z., Sekowska,A., Tutino,M.L., Vallenet,D., von
               Heijne,G. and Danchin,A.
     TITLE     Coping with cold: The genome of the versatile marine Antarctica
               bacterium Pseudoalteromonas haloplanktis TAC125
     JOURNAL   (er) Genome Res. 15 (10), 1325-1335 (2005) In press
      PUBMED   16169927
     REMARK    1. Genoscope, CNRS-UMR 8030, Atelier de Genomique Comparative, 2,
               rue Gaston Cremieux, 91006 Evry Cedex, France 2. Genetics of
               Bacterial Genomes, Institut Pasteur, 28 rue du Docteur Roux, 75724
               Paris Cedex 15, France 3. Dept of Biochemistry & Biophysics,
               Stockholm University, S-106 91 Stockholm, Sweden 4. Dynamique,
               Evolution et Expression de Genomes de Micro-organismes, Universite
               Louis Pasteur, 28, rue Goethe, 67000 Strasbourg, France 5.
               Laboratoire de Biochimie, Institut de Chimie B6, Universite de
               Liege, B-4000 Liege-Sart Tilman, Belgium 6. Dipartimento di Chimica
               Organica e Biochimica, edificio MB, via Cinthia, Complesso
               Universitario Monte S. Angelo, 80126 Napoli, Italy 7. CEA Saclay,
               Laboratoire Stress Oxydants et Cancer, DSV/DBJC/SBMS, Bat 142,
               91191 Gif sur Yvette Cedex, France
   REFERENCE   2  (bases 1 to 3214944)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3214944)
     AUTHORS   Genoscope.
     CONSRTM   Institut Pasteur and Genoscope
     TITLE     Direct Submission
     JOURNAL   Submitted (26-APR-2005) Genoscope, Centre National de Sequencage,
               BP 191, Evry cedex 91006, France
     REMARK    This sequence was made in collaboration between the laboratory
               Institut Pasteur (France) and Genoscope (France).
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CR954246.
               Annotation data relative to COG assignations, enzymatic function
               prediction (PRIAM software), TMHMM and SignalP predictions, and
               synteny results (Syntonizer software) are available in Psychroscope
               database via MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage/psychroscope. Each annotation
               includes a confidence level as follow: 1 : Function experimentally
               demonstrated in the studied organism 2a : Function of homologous
               gene experimentally demonstrated in an other organism
               2b : Function of strongly homologous gene
               3 : Function proposed based on presence of conserved amino acid
               motif, structural feature or limited homology
               4 : Homologs of previously reported genes of unknown function 5 :
               No homology to any previously reported sequences 6 : Doubtful CDS
               7 : Gene remnant.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
35140 36667 + 1528 77358982 PSHAa_rRNA16s6 - 16S ribosomal RNA
36745 36821 + 77 77358982 PSHAatRNA1 - 14 Ile tRNA
36933 37008 + 76 77358982 PSHAatRNA2 - 02 Ala tRNA
37315 40203 + 2889 77358982 PSHAa_rRNA23s6 - 23s
40347 40463 + 117 77358982 PSHAa_rRNA5s7 - 5S ribosomal RNA
59328 59420 - 93 77358982 PSHAatRNA106 - 08 Ser tRNA
59478 59568 - 91 77358982 PSHAatRNA105 - 08 Ser tRNA
124066 125593 + 1528 77358982 PSHAa_rRNA16s7 - 16s ribsomal RNA
125895 128784 + 2890 77358982 PSHAa_rRNA23s7 - 23s
128928 129044 + 117 77358982 PSHAa_rRNA5s8 - 5S ribosomal RNA
137523 137599 + 77 77358982 PSHAatRNA3 - 16 Met tRNA
137795 137871 + 77 77358982 PSHAatRNA4 - 16 Met tRNA
138045 138121 + 77 77358982 PSHAatRNA5 - 16 Met tRNA
224316 224392 + 77 77358982 PSHAatRNA6 - 20 Trp tRNA
265958 267485 + 1528 77358982 PSHAa_rRNA16s8 - 16s ribsomal RNA
267563 267639 + 77 77358982 PSHAatRNA7 - 14 Ile tRNA
267751 267826 + 76 77358982 PSHAatRNA8 - 02 Ala tRNA
268133 271021 + 2889 77358982 PSHAa_rRNA23s8 - 23s
271165 271281 + 117 77358982 PSHAa_rRNA5s9 - 5S ribosomal RNA
296689 296764 - 76 77358982 PSHAatRNA104 - 02 Ala tRNA
342483 342559 + 77 77358982 PSHAatRNA9 - 16 Met tRNA
414242 414317 - 76 77358982 PSHAatRNA103 - 09 His tRNA
506639 506714 + 76 77358982 PSHAatRNA10 - 01 Gly tRNA
506920 506995 + 76 77358982 PSHAatRNA11 - 01 Gly tRNA
507112 507187 + 76 77358982 PSHAatRNA12 - 01 Gly tRNA
509920 511447 + 1528 77358982 PSHAa_rRNA16s9 - 16S ribosomal RNA
511749 514637 + 2889 77358982 PSHAa_rRNA23s9 - 23S ribosomal RNA
514781 514897 + 117 77358982 PSHAa_rRNA5s10 - 5S ribosomal RNA
534723 534815 + 93 77358982 PSHAatRNA13 - 08 Ser tRNA
534851 534927 + 77 77358982 PSHAatRNA14 - 11 Arg tRNA
535030 535106 + 77 77358982 PSHAatRNA15 - 11 Arg tRNA
535254 535330 + 77 77358982 PSHAatRNA16 - 11 Arg tRNA
535445 535521 + 77 77358982 PSHAatRNA17 - 11 Arg tRNA
574291 574366 + 76 77358982 PSHAatRNA18 - 17 Phe tRNA
574439 574514 + 76 77358982 PSHAatRNA19 - 12 Thr tRNA
574659 574734 + 76 77358982 PSHAatRNA20 - 17 Phe tRNA
574794 574869 + 76 77358982 PSHAatRNA21 - 12 Thr tRNA
575168 575243 + 76 77358982 PSHAatRNA22 - 17 Phe tRNA
676584 676660 + 77 77358982 PSHAatRNA23 - 20 Trp tRNA
790914 790988 + 75 77358982 PSHAatRNA24 - 11 Arg tRNA
901280 901364 + 85 77358982 PSHAatRNA25 - 15 Leu tRNA
1030586 1030662 + 77 77358982 PSHAatRNA26 - 16 Met tRNA
1087155 1087229 - 75 77358982 PSHAatRNA102 - 05 Gln tRNA
1087269 1087353 - 85 77358982 PSHAatRNA101 - 15 Leu tRNA
1087424 1087498 - 75 77358982 PSHAatRNA100 - 05 Gln tRNA
1087537 1087621 - 85 77358982 PSHAatRNA99 - 15 Leu tRNA
1087706 1087780 - 75 77358982 PSHAatRNA98 - 05 Gln tRNA
1087819 1087903 - 85 77358982 PSHAatRNA97 - 15 Leu tRNA
1087996 1088072 - 77 77358982 PSHAatRNA96 - 16 Met tRNA
1088078 1088152 - 75 77358982 PSHAatRNA95 - 05 Gln tRNA
1088189 1088273 - 85 77358982 PSHAatRNA94 - 15 Leu tRNA
1088339 1088415 - 77 77358982 PSHAatRNA93 - 16 Met tRNA
1127656 1127731 - 76 77358982 PSHAatRNA92 - 13 Val tRNA
1127788 1127863 - 76 77358982 PSHAatRNA91 - 13 Val tRNA
1128013 1128088 - 76 77358982 PSHAatRNA90 - 13 Val tRNA
1128247 1128322 - 76 77358982 PSHAatRNA89 - 13 Val tRNA
1128474 1128549 - 76 77358982 PSHAatRNA88 - 13 Val tRNA
1128706 1128781 - 76 77358982 PSHAatRNA87 - 13 Val tRNA
1128932 1129007 - 76 77358982 PSHAatRNA86 - 13 Val tRNA
1129743 1129818 + 76 77358982 PSHAatRNA27 - 02 Ala tRNA
1129856 1129931 + 76 77358982 PSHAatRNA28 - 04 Glu tRNA
1130076 1130151 + 76 77358982 PSHAatRNA29 - 04 Glu tRNA
1130326 1130401 + 76 77358982 PSHAatRNA30 - 04 Glu tRNA
1130491 1130566 + 76 77358982 PSHAatRNA31 - 04 Glu tRNA
1130656 1130731 + 76 77358982 PSHAatRNA32 - 04 Glu tRNA
1130821 1130896 + 76 77358982 PSHAatRNA33 - 04 Glu tRNA
1131075 1131150 + 76 77358982 PSHAatRNA34 - 04 Glu tRNA
1153663 1153739 - 77 77358982 PSHAatRNA85 - 07 Asn tRNA
1153765 1153841 - 77 77358982 PSHAatRNA84 - 07 Asn tRNA
1153864 1153940 - 77 77358982 PSHAatRNA83 - 07 Asn tRNA
1153962 1154038 - 77 77358982 PSHAatRNA82 - 07 Asn tRNA
1199960 1200044 - 85 77358982 PSHAatRNA81 - 18 Tyr tRNA
1200094 1200178 - 85 77358982 PSHAatRNA80 - 18 Tyr tRNA
1484222 1484312 + 91 77358982 PSHAatRNA35 - 08 Ser tRNA
1761799 1761889 - 91 77358982 PSHAatRNA79 - 08 Ser tRNA
1761991 1762081 - 91 77358982 PSHAatRNA78 - 08 Ser tRNA
1817986 1818062 + 77 77358982 PSHAatRNA36 - 13 Val tRNA
1818114 1818190 + 77 77358982 PSHAatRNA37 - 13 Val tRNA
1968865 1968954 - 90 77358982 PSHAatRNA77 - 08 Ser tRNA
1970344 1970419 - 76 77358982 PSHAatRNA76 - 10 Lys tRNA
1970504 1970579 - 76 77358982 PSHAatRNA75 - 10 Lys tRNA
1970651 1970726 - 76 77358982 PSHAatRNA74 - 10 Lys tRNA
1970812 1970887 - 76 77358982 PSHAatRNA73 - 10 Lys tRNA
1970957 1971032 - 76 77358982 PSHAatRNA72 - 10 Lys tRNA
1971118 1971193 - 76 77358982 PSHAatRNA71 - 10 Lys tRNA
1971263 1971338 - 76 77358982 PSHAatRNA70 - 10 Lys tRNA
1971417 1971492 - 76 77358982 PSHAatRNA69 - 10 Lys tRNA
1983712 1983788 + 77 77358982 PSHAatRNA38 - 03 Pro tRNA
2014134 2014250 - 117 77358982 PSHAa_rRNA5s6 - 5S ribosomal RNA
2014394 2017282 - 2889 77358982 PSHAa_rRNA23s5 - 23S ribosomal RNA
2017583 2019110 - 1528 77358982 PSHAa_rRNA16s5 - 16S ribosomal RNA
2021825 2021911 - 87 77358982 PSHAatRNA68 - 15 Leu tRNA
2021950 2022023 - 74 77358982 PSHAatRNA67 - 19 Cys tRNA
2022043 2022118 - 76 77358982 PSHAatRNA66 - 01 Gly tRNA
2022194 2022280 - 87 77358982 PSHAatRNA65 - 15 Leu tRNA
2022320 2022395 - 76 77358982 PSHAatRNA64 - 01 Gly tRNA
2022460 2022546 - 87 77358982 PSHAatRNA63 - 15 Leu tRNA
2022584 2022657 - 74 77358982 PSHAatRNA62 - 19 Cys tRNA
2022675 2022750 - 76 77358982 PSHAatRNA61 - 01 Gly tRNA
2064272 2064348 - 77 77358982 PSHAatRNA60 - 06 Asp tRNA
2064403 2064479 - 77 77358982 PSHAatRNA59 - 06 Asp tRNA
2064527 2064603 - 77 77358982 PSHAatRNA58 - 06 Asp tRNA
2064642 2064718 - 77 77358982 PSHAatRNA57 - 06 Asp tRNA
2064752 2064828 - 77 77358982 PSHAatRNA56 - 06 Asp tRNA
2064870 2064946 - 77 77358982 PSHAatRNA55 - 06 Asp tRNA
2064973 2065049 - 77 77358982 PSHAatRNA54 - 06 Asp tRNA
2065845 2065921 - 77 77358982 PSHAatRNA53 - 06 Asp tRNA
2065955 2066031 - 77 77358982 PSHAatRNA52 - 06 Asp tRNA
2066073 2066149 - 77 77358982 PSHAatRNA51 - 06 Asp tRNA
2066176 2066252 - 77 77358982 PSHAatRNA50 - 06 Asp tRNA
2183379 2183455 - 77 77358982 PSHAatRNA49 - 03 Pro tRNA
2183520 2183596 - 77 77358982 PSHAatRNA48 - 03 Pro tRNA
2183612 2183687 - 76 77358982 PSHAatRNA47 - 09 His tRNA
2183711 2183787 - 77 77358982 PSHAatRNA46 - 11 Arg tRNA
2183904 2183980 - 77 77358982 PSHAatRNA45 - 03 Pro tRNA
2480362 2480477 - 116 77358982 PSHAa_rRNA5s5 - 5S ribosomal RNA
2480542 2480658 - 117 77358982 PSHAa_rRNA5s4 - 5S ribosomal RNA
2480802 2483690 - 2889 77358982 PSHAa_rRNA23s4 - 23s
2483991 2485518 - 1528 77358982 PSHAa_rRNA16s4 - 16S ribosomal RNA
2569720 2569804 - 85 77358982 PSHAatRNA44 - 15 Leu tRNA
2581718 2581792 - 75 77358982 PSHAatRNA43 - 11 Arg tRNA
2959882 2959998 - 117 77358982 PSHAa_rRNA5s3 - 5S ribosomal RNA
2960142 2963030 - 2889 77358982 PSHAa_rRNA23s3 - 23s
2963333 2964860 - 1528 77358982 PSHAa_rRNA16s3 - 16S ribosomal RNA
2978832 2978948 - 117 77358982 PSHAa_rRNA5s2 - 5S ribosomal RNA
2979092 2981980 - 2889 77358982 PSHAa_rRNA23s2 - 23S ribosomal RNA
2982280 2983807 - 1528 77358982 PSHAa_rRNA16s2 - 16S ribosomal RNA
3080703 3080778 - 76 77358982 PSHAatRNA42 - 12 Thr tRNA
3080791 3080865 - 75 77358982 PSHAatRNA41 - 01 Gly tRNA
3080911 3080995 - 85 77358982 PSHAatRNA40 - 18 Tyr tRNA
3081037 3081112 - 76 77358982 PSHAatRNA39 - 12 Thr tRNA
3189804 3189920 - 117 77358982 PSHAa_rRNA5s1 - 5S ribosomal RNA
3190064 3192952 - 2889 77358982 PSHAa_rRNA23s1 - 23S ribosomal RNA
3193253 3194780 - 1528 77358982 PSHAa_rRNA16s1 - 16S ribosomal RNA