Геном прокариот/Материалы:NC 007519
(перенаправлено с «Материалы:NC 007519»)
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Базовый уровень статей |
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LOCUS NC_007519 3730232 bp DNA circular BCT 04-APR-2006
DEFINITION Desulfovibrio desulfuricans G20, complete genome.
ACCESSION NC_007519
VERSION NC_007519.1 GI:78355047
KEYWORDS .
SOURCE Desulfovibrio desulfuricans G20
ORGANISM Desulfovibrio desulfuricans G20
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
Desulfovibrionaceae; Desulfovibrio.
REFERENCE 1 (bases 1 to 3730232)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Desulfovibrio desulfuricans G20
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3730232)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3730232)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000112.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Judy Wall
(wallj@missouri.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК[править]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 69874 | 71392 | + | 1519 | 78355047 | Dde_R0001 | - | 16S ribosomal RNA |
| 71460 | 71536 | + | 77 | 78355047 | Dde_R0002 | - | 14 Ile tRNA |
| 71551 | 71626 | + | 76 | 78355047 | Dde_R0003 | - | 02 Ala tRNA |
| 71835 | 74651 | + | 2817 | 78355047 | Dde_R0004 | - | 23S ribosomal RNA |
| 74916 | 74979 | + | 64 | 78355047 | Dde_R0005 | - | 5S ribosomal RNA |
| 137031 | 137107 | - | 77 | 78355047 | Dde_R0006 | - | 11 Arg tRNA |
| 179761 | 179836 | - | 76 | 78355047 | Dde_R0007 | - | 10 Lys tRNA |
| 560298 | 560373 | - | 76 | 78355047 | Dde_R0008 | - | 09 His tRNA |
| 640645 | 640722 | - | 78 | 78355047 | Dde_R0009 | - | 04 Glu tRNA |
| 640737 | 640811 | - | 75 | 78355047 | Dde_R0010 | - | 05 Gln tRNA |
| 677828 | 677903 | + | 76 | 78355047 | Dde_R0011 | - | 13 Val tRNA |
| 703376 | 703453 | + | 78 | 78355047 | Dde_R0012 | - | 04 Glu tRNA |
| 903897 | 903983 | - | 87 | 78355047 | Dde_R0013 | - | 15 Leu tRNA |
| 917593 | 917678 | - | 86 | 78355047 | Dde_R0014 | - | 15 Leu tRNA |
| 1028167 | 1028258 | - | 92 | 78355047 | Dde_R0015 | - | 08 Ser tRNA |
| 1028399 | 1028487 | - | 89 | 78355047 | Dde_R0016 | - | SRP RNA; RNA component of signal recognition particle |
| 1028529 | 1028620 | - | 92 | 78355047 | Dde_R0017 | - | 08 Ser tRNA |
| 1109628 | 1109721 | - | 94 | 78355047 | Dde_R0018 | - | 08 Ser tRNA |
| 1248668 | 1248743 | + | 76 | 78355047 | Dde_R0019 | - | 12 Thr tRNA |
| 1309461 | 1310964 | + | 1504 | 78355047 | Dde_R0020 | - | 16S ribosomal RNA |
| 1311051 | 1311127 | + | 77 | 78355047 | Dde_R0021 | - | 14 Ile tRNA |
| 1311142 | 1311217 | + | 76 | 78355047 | Dde_R0022 | - | 02 Ala tRNA |
| 1311426 | 1314241 | + | 2816 | 78355047 | Dde_R0023 | - | 23S ribosomal RNA |
| 1314473 | 1314586 | + | 114 | 78355047 | Dde_R0024 | - | 5S ribosomal RNA |
| 1319605 | 1319680 | - | 76 | 78355047 | Dde_R0025 | - | 10 Lys tRNA |
| 1321766 | 1321841 | + | 76 | 78355047 | Dde_R0026 | - | 10 Lys tRNA |
| 1382523 | 1382598 | - | 76 | 78355047 | Dde_R0027 | - | 07 Asn tRNA |
| 1383134 | 1383209 | - | 76 | 78355047 | Dde_R0028 | - | 07 Asn tRNA |
| 1531715 | 1531804 | - | 90 | 78355047 | Dde_R0029 | - | Sec tRNA |
| 1594575 | 1594652 | - | 78 | 78355047 | Dde_R0030 | - | 03 Pro tRNA |
| 1626556 | 1626632 | + | 77 | 78355047 | Dde_R0031 | - | 16 Met tRNA |
| 1722132 | 1722208 | - | 77 | 78355047 | Dde_R0032 | - | 03 Pro tRNA |
| 1785177 | 1785480 | - | 304 | 78355047 | Dde_R0033 | - | RNA component of RNaseP |
| 1787650 | 1787745 | + | 96 | 78355047 | Dde_R0034 | - | 08 Ser tRNA |
| 1840105 | 1840181 | - | 77 | 78355047 | Dde_R0035 | - | 11 Arg tRNA |
| 1840209 | 1840285 | - | 77 | 78355047 | Dde_R0036 | - | 11 Arg tRNA |
| 1840308 | 1840384 | - | 77 | 78355047 | Dde_R0037 | - | 11 Arg tRNA |
| 1988131 | 1988490 | - | 360 | 78355047 | Dde_R0038 | - | tmRNA |
| 1997002 | 1997078 | - | 77 | 78355047 | Dde_R0039 | - | 16 Met tRNA |
| 1997218 | 1997294 | - | 77 | 78355047 | Dde_R0040 | - | 16 Met tRNA |
| 2031899 | 2031984 | - | 86 | 78355047 | Dde_R0041 | - | 15 Leu tRNA |
| 2047102 | 2047178 | + | 77 | 78355047 | Dde_R0042 | - | 11 Arg tRNA |
| 2175143 | 2175218 | + | 76 | 78355047 | Dde_R0043 | - | 05 Gln tRNA |
| 2197430 | 2197505 | + | 76 | 78355047 | Dde_R0044 | - | 16 Met tRNA |
| 2265062 | 2265146 | - | 85 | 78355047 | Dde_R0045 | - | 15 Leu tRNA |
| 2365963 | 2366037 | + | 75 | 78355047 | Dde_R0046 | - | 01 Gly tRNA |
| 2366060 | 2366134 | + | 75 | 78355047 | Dde_R0047 | - | 19 Cys tRNA |
| 2366142 | 2366216 | + | 75 | 78355047 | Dde_R0048 | - | 01 Gly tRNA |
| 2366288 | 2366363 | + | 76 | 78355047 | Dde_R0049 | - | 01 Gly tRNA |
| 2366407 | 2366481 | + | 75 | 78355047 | Dde_R0050 | - | 01 Gly tRNA |
| 2509400 | 2509486 | + | 87 | 78355047 | Dde_R0051 | - | 15 Leu tRNA |
| 2604046 | 2604159 | - | 114 | 78355047 | Dde_R0052 | - | 5S ribosomal RNA |
| 2604393 | 2607206 | - | 2814 | 78355047 | Dde_R0053 | - | 23S ribosomal RNA |
| 2607415 | 2607490 | - | 76 | 78355047 | Dde_R0054 | - | 02 Ala tRNA |
| 2607505 | 2607581 | - | 77 | 78355047 | Dde_R0055 | - | 14 Ile tRNA |
| 2607679 | 2609167 | - | 1489 | 78355047 | Dde_R0056 | - | 16S ribosomal RNA |
| 2657235 | 2657309 | - | 75 | 78355047 | Dde_R0057 | - | 13 Val tRNA |
| 2908395 | 2908486 | - | 92 | 78355047 | Dde_R0058 | - | 08 Ser tRNA |
| 2969133 | 2969208 | + | 76 | 78355047 | Dde_R0059 | - | 12 Thr tRNA |
| 2969214 | 2969299 | + | 86 | 78355047 | Dde_R0060 | - | 18 Tyr tRNA |
| 2969352 | 2969428 | + | 77 | 78355047 | Dde_R0061 | - | 01 Gly tRNA |
| 2969465 | 2969540 | + | 76 | 78355047 | Dde_R0062 | - | 12 Thr tRNA |
| 2970953 | 2971029 | + | 77 | 78355047 | Dde_R0063 | - | 20 Trp tRNA |
| 3012121 | 3012197 | - | 77 | 78355047 | Dde_R0064 | - | 06 Asp tRNA |
| 3012203 | 3012278 | - | 76 | 78355047 | Dde_R0065 | - | 13 Val tRNA |
| 3025302 | 3025378 | - | 77 | 78355047 | Dde_R0066 | - | 06 Asp tRNA |
| 3048400 | 3048476 | - | 77 | 78355047 | Dde_R0067 | - | 11 Arg tRNA |
| 3128059 | 3128136 | + | 78 | 78355047 | Dde_R0068 | - | 04 Glu tRNA |
| 3247201 | 3247277 | + | 77 | 78355047 | Dde_R0069 | - | 03 Pro tRNA |
| 3247482 | 3247557 | + | 76 | 78355047 | Dde_R0070 | - | 12 Thr tRNA |
| 3405199 | 3405274 | - | 76 | 78355047 | Dde_R0071 | - | 02 Ala tRNA |
| 3465584 | 3465670 | + | 87 | 78355047 | Dde_R0072 | - | 15 Leu tRNA |
| 3514674 | 3514749 | + | 76 | 78355047 | Dde_R0073 | - | 17 Phe tRNA |
| 3531911 | 3531997 | - | 87 | 78355047 | Dde_R0074 | - | 15 Leu tRNA |
| 3533634 | 3533731 | - | 98 | 78355047 | Dde_R0075 | - | 5S ribosomal RNA |
| 3533981 | 3536778 | - | 2798 | 78355047 | Dde_R0076 | - | 23S ribosomal RNA |
| 3536987 | 3537062 | - | 76 | 78355047 | Dde_R0077 | - | 02 Ala tRNA |
| 3537077 | 3537153 | - | 77 | 78355047 | Dde_R0078 | - | 14 Ile tRNA |
| 3537239 | 3538739 | - | 1501 | 78355047 | Dde_R0079 | - | 16S ribosomal RNA |
| 3575981 | 3576057 | - | 77 | 78355047 | Dde_R0080 | - | 16 Met tRNA |
| 3713040 | 3713115 | - | 76 | 78355047 | Dde_R0081 | - | 02 Ala tRNA |