Геном прокариот/Материалы:NC 007777

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   LOCUS       NC_007777            5433628 bp    DNA     circular BCT 26-FEB-2007
   DEFINITION  Frankia sp. CcI3, complete genome.
   ACCESSION   NC_007777
   VERSION     NC_007777.1  GI:86738724
   KEYWORDS    .
   SOURCE      Frankia sp. CcI3
     ORGANISM  Frankia sp. CcI3
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Frankiaceae; Frankia.
   REFERENCE   1  (bases 1 to 5433628)
     AUTHORS   Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N.,
               Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N.,
               Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N.,
               Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L.,
               Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E.,
               Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z.,
               Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D.,
               Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Genome characteristics of facultatively symbiotic Frankia sp.
               strains reflect host range and host plant biogeography
     JOURNAL   Genome Res. 17 (1), 7-15 (2007)
      PUBMED   17151343
   REFERENCE   2  (bases 1 to 5433628)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (07-FEB-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5433628)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N.,
               Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J.,
               Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000249.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Louis Tisa
               (lst@patia.unh.edu)
               Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
12560 12633 + 74 86738724 Francci3_R0001 - 14 Ile tRNA
123014 123089 + 76 86738724 Francci3_R0002 - 04 Glu tRNA
139982 140056 + 75 86738724 Francci3_R0003 - 06 Asp tRNA
140109 140185 + 77 86738724 Francci3_R0004 - 17 Phe tRNA
159228 159301 + 74 86738724 Francci3_R0005 - Xaa tRNA
312022 312113 - 92 86738724 Francci3_R0006 - SRP RNA; RNA component of signal recognition particle
312223 312310 + 88 86738724 Francci3_R0007 - 08 Ser tRNA
325308 325397 - 90 86738724 Francci3_R0008 - 08 Ser tRNA
331492 331660 - 169 86738724 Francci3_R0009 -
455994 456011 + 18 86738724 Francci3_R0010 -
479516 479588 - 73 86738724 Francci3_R0011 - 11 Arg tRNA
498597 498687 - 91 86738724 Francci3_R0012 - 08 Ser tRNA
506116 506188 + 73 86738724 Francci3_R0013 - 11 Arg tRNA
650716 650800 + 85 86738724 Francci3_R0014 - 18 Tyr tRNA
654669 654744 + 76 86738724 Francci3_R0015 - 12 Thr tRNA
654844 654920 + 77 86738724 Francci3_R0016 - 16 Met tRNA
657974 658046 + 73 86738724 Francci3_R0017 - 20 Trp tRNA
1055014 1055097 - 84 86738724 Francci3_R0018 - 15 Leu tRNA
1193833 1193908 + 76 86738724 Francci3_R0019 -
1225981 1226056 - 76 86738724 Francci3_R0020 - 10 Lys tRNA
1235918 1235993 - 76 86738724 Francci3_R0021 - 09 His tRNA
1359186 1359258 - 73 86738724 Francci3_R0022 - 11 Arg tRNA
1436620 1436693 - 74 86738724 Francci3_R0023 - 01 Gly tRNA
1436741 1436816 + 76 86738724 Francci3_R0024 - 03 Pro tRNA
1478719 1478795 + 77 86738724 Francci3_R0025 - 02 Ala tRNA
1630709 1630783 - 75 86738724 Francci3_R0026 - 13 Val tRNA
1630797 1630868 - 72 86738724 Francci3_R0027 - 19 Cys tRNA
1630912 1630984 - 73 86738724 Francci3_R0028 - 01 Gly tRNA
1633415 1633486 + 72 86738724 Francci3_R0029 - 13 Val tRNA
1734780 1735088 - 309 86738724 Francci3_R0030 - RNA component of RNaseP
1750296 1750369 - 74 86738724 Francci3_R0031 - 03 Pro tRNA
1941005 1941080 - 76 86738724 Francci3_R0032 - 15 Leu tRNA
2386761 2386845 + 85 86738724 Francci3_R0033 - 15 Leu tRNA
3017451 3017526 + 76 86738724 Francci3_R0034 -
3540383 3540549 - 167 86738724 Francci3_R0035 -
3619318 3619389 - 72 86738724 Francci3_R0036 - 13 Val tRNA
3645050 3645163 - 114 86738724 Francci3_R0037 -
3747925 3748041 - 117 86738724 Francci3_R0038 - 5S ribosomal RNA
3748112 3751216 - 3105 86738724 Francci3_R0039 - 23S ribosomal RNA
3751629 3753140 - 1512 86738724 Francci3_R0040 - 16S ribosomal RNA
3777396 3777525 - 130 86738724 Francci3_R0041 -
3816293 3816365 + 73 86738724 Francci3_R0042 - 07 Asn tRNA
4032685 4032761 - 77 86738724 Francci3_R0043 - 16 Met tRNA
4330689 4330761 - 73 86738724 Francci3_R0044 - 04 Glu tRNA
4330869 4330940 - 72 86738724 Francci3_R0045 - 05 Gln tRNA
4365755 4365871 - 117 86738724 Francci3_R0046 - 5S ribosomal RNA
4365942 4369046 - 3105 86738724 Francci3_R0047 - 23S ribosomal RNA
4369459 4370970 - 1512 86738724 Francci3_R0048 - 16S ribosomal RNA
4463891 4463962 + 72 86738724 Francci3_R0049 - 11 Arg tRNA
4465283 4465358 - 76 86738724 Francci3_R0050 -
4530150 4530226 - 77 86738724 Francci3_R0051 - 16 Met tRNA
4685233 4685310 - 78 86738724 Francci3_R0052 - 15 Leu tRNA
4739936 4740007 + 72 86738724 Francci3_R0053 - 05 Gln tRNA
4772991 4773067 + 77 86738724 Francci3_R0054 - 02 Ala tRNA
4868061 4868187 - 127 86738724 Francci3_R0055 -
4868188 4868279 - 92 86738724 Francci3_R0056 -
4886215 4886290 + 76 86738724 Francci3_R0057 - 12 Thr tRNA
4924264 4924339 - 76 86738724 Francci3_R0058 -
5039206 5039304 + 99 86738724 Francci3_R0059 -
5067454 5067607 + 154 86738724 Francci3_R0060 -
5104095 5104171 - 77 86738724 Francci3_R0061 - 03 Pro tRNA
5148262 5148333 + 72 86738724 Francci3_R0062 - 12 Thr tRNA
5171614 5171702 - 89 86738724 Francci3_R0063 - 08 Ser tRNA
5180002 5180074 + 73 86738724 Francci3_R0064 - 10 Lys tRNA
5188571 5188644 - 74 86738724 Francci3_R0065 - 01 Gly tRNA
5213920 5214154 + 235 86738724 Francci3_R0066 -
5215315 5215501 + 187 86738724 Francci3_R0067 -
5255171 5255287 + 117 86738724 Francci3_R0068 -
5295134 5295216 - 83 86738724 Francci3_R0069 - 15 Leu tRNA
5380134 5380206 - 73 86738724 Francci3_R0070 - 02 Ala tRNA