Геном прокариот/Материалы:NC 007794

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007794            3561584 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Novosphingobium aromaticivorans DSM 12444, complete genome.
   ACCESSION   NC_007794
   VERSION     NC_007794.1  GI:87198026
   KEYWORDS    .
   SOURCE      Novosphingobium aromaticivorans DSM 12444
     ORGANISM  Novosphingobium aromaticivorans DSM 12444
               Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
               Sphingomonadaceae; Novosphingobium.
   REFERENCE   1  (bases 1 to 3561584)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Novosphingobium aromaticivorans DSM 12444
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3561584)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-FEB-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3561584)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000248.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Margie
               Romine(margie.romine@pnl.gov)
               Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
163991	164075	+	85	87198026	Saro_R0001	-	^{15 Leu tRNA}
249576	249864	+	289	87198026	Saro_R0002	-
251494	251570	+	77	87198026	Saro_R0003	-	^{11 Arg tRNA}
268084	268150	-	67	87198026	Saro_R0004	-	Xaa tRNA
284600	284674	-	75	87198026	Saro_R0005	-	^{01 Gly tRNA}
516668	516741	+	74	87198026	Saro_R0006	-	^{05 Gln tRNA}
546809	546882	+	74	87198026	Saro_R0007	-	^{19 Cys tRNA}
665380	665453	-	74	87198026	Saro_R0008	-	^{01 Gly tRNA}
742029	742115	+	87	87198026	Saro_R0009	-	^{15 Leu tRNA}
839802	839894	-	93	87198026	Saro_R0010	-	^{08 Ser tRNA}
879910	879985	+	76	87198026	Saro_R0011	-	^{20 Trp tRNA}
904385	904459	-	75	87198026	Saro_R0012	-	^{13 Val tRNA}
935070	935399	+	330	87198026	Saro_R0013	-	tmRNA
1097478	1097553	-	76	87198026	Saro_R0014	-	^{17 Phe tRNA}
1193066	1193141	+	76	87198026	Saro_R0015	-	^{02 Ala tRNA}
1251847	1251923	-	77	87198026	Saro_R0016	-	^{03 Pro tRNA}
1329830	1329904	-	75	87198026	Saro_R0017	-	^{13 Val tRNA}
1371021	1371096	+	76	87198026	Saro_R0018	-	^{02 Ala tRNA}
1385864	1385939	+	76	87198026	Saro_R0019	-	^{12 Thr tRNA}
1394303	1394378	-	76	87198026	Saro_R0020	-	^{16 Met tRNA}
1403602	1403693	+	92	87198026	Saro_R0021	-	SRP RNA; RNA component of signal recognition particle
1413246	1413331	+	86	87198026	Saro_R0022	-	^{18 Tyr tRNA}
1431862	1431938	+	77	87198026	Saro_R0023	-	^{09 His tRNA}
1493941	1494031	+	91	87198026	Saro_R0024	-	^{08 Ser tRNA}
1702491	1702567	-	77	87198026	Saro_R0025	-	^{16 Met tRNA}
1926155	1926262	+	108	87198026	Saro_R0026	-
1949626	1949721	+	96	87198026	Saro_R0027	-
1949722	1949846	+	125	87198026	Saro_R0028	-
2019859	2019935	+	77	87198026	Saro_R0029	-	^{11 Arg tRNA}
2019998	2020074	+	77	87198026	Saro_R0030	-	^{11 Arg tRNA}
2060462	2060551	+	90	87198026	Saro_R0031	-	^{08 Ser tRNA}
2075543	2075626	-	84	87198026	Saro_R0032	-	^{15 Leu tRNA}
2089583	2089659	-	77	87198026	Saro_R0033	-	^{06 Asp tRNA}
2089968	2090044	-	77	87198026	Saro_R0034	-	^{06 Asp tRNA}
2095661	2095737	+	77	87198026	Saro_R0035	-	^{03 Pro tRNA}
2105462	2105536	+	75	87198026	Saro_R0036	-	^{07 Asn tRNA}
2144419	2144495	-	77	87198026	Saro_R0037	-	^{11 Arg tRNA}
2214965	2215041	+	77	87198026	Saro_R0038	-	^{03 Pro tRNA}
2272437	2272512	+	76	87198026	Saro_R0039	-	^{10 Lys tRNA}
2272556	2272631	+	76	87198026	Saro_R0040	-	^{10 Lys tRNA}
2334344	2334429	-	86	87198026	Saro_R0041	-
2415278	2415352	+	75	87198026	Saro_R0042	-	^{04 Glu tRNA}
2415412	2415486	+	75	87198026	Saro_R0043	-	^{04 Glu tRNA}
2679696	2679785	-	90	87198026	Saro_R0044	-	^{08 Ser tRNA}
2697099	2697175	+	77	87198026	Saro_R0045	-	^{11 Arg tRNA}
2752877	2752952	+	76	87198026	Saro_R0046	-	^{12 Thr tRNA}
2804473	2804547	+	75	87198026	Saro_R0047	-	^{05 Gln tRNA}
2847088	2847164	-	77	87198026	Saro_R0048	-	^{16 Met tRNA}
2847288	2847402	-	115	87198026	Saro_R0049	-	5S ribosomal RNA
2847556	2850338	-	2783	87198026	Saro_R0050	-	23S ribosomal RNA
2850668	2850743	-	76	87198026	Saro_R0051	-	^{02 Ala tRNA}
2850762	2850838	-	77	87198026	Saro_R0052	-	^{14 Ile tRNA}
2851010	2852488	-	1479	87198026	Saro_R0053	-	16S ribosomal RNA
2852821	2852897	-	77	87198026	Saro_R0054	-	^{16 Met tRNA}
2853021	2853135	-	115	87198026	Saro_R0055	-	5S ribosomal RNA
2853289	2856071	-	2783	87198026	Saro_R0056	-	23S ribosomal RNA
2856401	2856476	-	76	87198026	Saro_R0057	-	^{02 Ala tRNA}
2856495	2856571	-	77	87198026	Saro_R0058	-	^{14 Ile tRNA}
2856743	2858221	-	1479	87198026	Saro_R0059	-	16S ribosomal RNA
2858554	2858630	-	77	87198026	Saro_R0060	-	^{16 Met tRNA}
2858754	2858868	-	115	87198026	Saro_R0061	-	5S ribosomal RNA
2859022	2861804	-	2783	87198026	Saro_R0062	-	23S ribosomal RNA
2862134	2862209	-	76	87198026	Saro_R0063	-	^{02 Ala tRNA}
2862228	2862304	-	77	87198026	Saro_R0064	-	^{14 Ile tRNA}
2862476	2863954	-	1479	87198026	Saro_R0065	-	16S ribosomal RNA
2932877	2932952	+	76	87198026	Saro_R0066	-	^{13 Val tRNA}
2980738	2980807	+	70	87198026	Saro_R0067	-	^{13 Val tRNA}
3200632	3200717	+	86	87198026	Saro_R0068	-	Xaa tRNA
3237082	3237155	-	74	87198026	Saro_R0069	-	^{01 Gly tRNA}
3267285	3267641	+	357	87198026	Saro_R0070	-	RNA component of RNaseP
3277055	3277139	-	85	87198026	Saro_R0071	-	^{15 Leu tRNA}
3300661	3300747	+	87	87198026	Saro_R0072	-	^{15 Leu tRNA}
3312660	3312735	-	76	87198026	Saro_R0073	-	^{10 Lys tRNA}
3486528	3486602	+	75	87198026	Saro_R0074	-	^{12 Thr tRNA}