Геном прокариот/Материалы:NC 007802

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   LOCUS       NC_007802            4317977 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Jannaschia sp. CCS1, complete genome.
   ACCESSION   NC_007802
   VERSION     NC_007802.1  GI:89052491
   KEYWORDS    .
   SOURCE      Jannaschia sp. CCS1
     ORGANISM  Jannaschia sp. CCS1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Jannaschia.
   REFERENCE   1  (bases 1 to 4317977)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R.,
               Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Jannaschia sp. CCS1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4317977)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4317977)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R.,
               Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (23-FEB-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000264.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Mary Ann Moran
               (mmoran@uga.edu)
               Contacts: Mary Ann Moran (mmoran@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
121018 121094 + 77 89052491 Jann_R0001 - 03 Pro tRNA
236994 237080 - 87 89052491 Jann_R0002 - 15 Leu tRNA
318356 318432 - 77 89052491 Jann_R0003 - 11 Arg tRNA
325459 325534 - 76 89052491 Jann_R0004 - 10 Lys tRNA
336726 336841 - 116 89052491 Jann_R0005 -
546394 546469 + 76 89052491 Jann_R0006 - 20 Trp tRNA
618250 618326 + 77 89052491 Jann_R0007 - 11 Arg tRNA
795771 795846 + 76 89052491 Jann_R0008 - 02 Ala tRNA
1178199 1178546 - 348 89052491 Jann_R0009 - RNA component of RNaseP
1211447 1211533 + 87 89052491 Jann_R0010 - 15 Leu tRNA
1240889 1240978 + 90 89052491 Jann_R0011 - 08 Ser tRNA
1489240 1489323 + 84 89052491 Jann_R0012 - 15 Leu tRNA
1770624 1770700 - 77 89052491 Jann_R0013 - 03 Pro tRNA
1817951 1818025 - 75 89052491 Jann_R0014 - 07 Asn tRNA
1820377 1820453 - 77 89052491 Jann_R0015 - 16 Met tRNA
1967604 1967677 - 74 89052491 Jann_R0016 - 01 Gly tRNA
1997062 1997151 + 90 89052491 Jann_R0017 - 08 Ser tRNA
2146891 2146967 + 77 89052491 Jann_R0018 - 11 Arg tRNA
2259261 2259475 - 215 89052491 Jann_R0019 -
2285359 2285448 - 90 89052491 Jann_R0020 - 08 Ser tRNA
2392003 2392321 + 319 89052491 Jann_R0021 - tmRNA
2471282 2471358 - 77 89052491 Jann_R0022 - 03 Pro tRNA
2491311 2491395 - 85 89052491 Jann_R0023 - 15 Leu tRNA
2508751 2508827 - 77 89052491 Jann_R0024 - 06 Asp tRNA
2509178 2509254 - 77 89052491 Jann_R0025 - 06 Asp tRNA
2513565 2513640 - 76 89052491 Jann_R0026 - 13 Val tRNA
2514358 2514432 - 75 89052491 Jann_R0027 - 13 Val tRNA
2648503 2648578 - 76 89052491 Jann_R0028 - 12 Thr tRNA
2805559 2805633 + 75 89052491 Jann_R0029 - 01 Gly tRNA
2814922 2815005 + 84 89052491 Jann_R0030 - Xaa tRNA
2889361 2889435 - 75 89052491 Jann_R0031 - 17 Phe tRNA
2907755 2907829 + 75 89052491 Jann_R0032 - 12 Thr tRNA
2937348 2937421 - 74 89052491 Jann_R0033 - 01 Gly tRNA
2957972 2958160 - 189 89052491 Jann_R0034 -
3023715 3023789 + 75 89052491 Jann_R0035 - 04 Glu tRNA
3256789 3256876 + 88 89052491 Jann_R0036 - 15 Leu tRNA
3310119 3310192 + 74 89052491 Jann_R0037 - 19 Cys tRNA
3456370 3456446 - 77 89052491 Jann_R0038 - 09 His tRNA
3578447 3578536 + 90 89052491 Jann_R0039 - 08 Ser tRNA
3675590 3675666 - 77 89052491 Jann_R0040 - 11 Arg tRNA
3691970 3692073 + 104 89052491 Jann_R0041 -
3692077 3692151 + 75 89052491 Jann_R0042 -
3734324 3734398 + 75 89052491 Jann_R0043 - 05 Gln tRNA
3789301 3789377 + 77 89052491 Jann_R0044 - 16 Met tRNA
3970799 3970899 + 101 89052491 Jann_R0045 - SRP RNA; RNA component of signal recognition particle
4078359 4078435 - 77 89052491 Jann_R0046 - 16 Met tRNA
4078796 4078910 - 115 89052491 Jann_R0047 - 5S ribosomal RNA
4079054 4082437 - 3384 89052491 Jann_R0048 - 23S ribosomal RNA
4082846 4082921 - 76 89052491 Jann_R0049 - 02 Ala tRNA
4082993 4083069 - 77 89052491 Jann_R0050 - 14 Ile tRNA
4083217 4084677 - 1461 89052491 Jann_R0051 - 16S ribosomal RNA
4101511 4101585 + 75 89052491 Jann_R0052 - 13 Val tRNA
4190344 4190419 + 76 89052491 Jann_R0053 - 12 Thr tRNA