Материалы:NC 007946

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007946            5065741 bp    DNA     circular BCT 12-MAR-2007
   DEFINITION  Escherichia coli UTI89, complete genome.
   ACCESSION   NC_007946
   VERSION     NC_007946.1  GI:91209055
   KEYWORDS    .
   SOURCE      Escherichia coli UTI89
     ORGANISM  Escherichia coli UTI89
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Escherichia.
   REFERENCE   1  (bases 1 to 5065741)
     AUTHORS   Chen,S.L., Hung,C.S., Xu,J., Reigstad,C.S., Magrini,V., Sabo,A.,
               Blasiar,D., Bieri,T., Meyer,R.R., Ozersky,P., Armstrong,J.R.,
               Fulton,R.S., Latreille,J.P., Spieth,J., Hooton,T.M., Mardis,E.R.,
               Hultgren,S.J. and Gordon,J.I.
     TITLE     Identification of genes subject to positive selection in
               uropathogenic strains of Escherichia coli: A comparative genomics
               approach
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5977-5982 (2006)
      PUBMED   16585510
   REFERENCE   2  (bases 1 to 5065741)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (07-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5065741)
     AUTHORS   Chen,S.L., Hung,C.-S., Xu,J., Reigstad,C.S., Magrini,V., Sabo,A.,
               Blasiar,D., Bieri,T., Meyer,R.R., Ozersky,P., Armstrong,J.R.,
               Fulton,R.S., Latreille,J.P., Spieth,J., Hooton,T.M., Mardis,E.R.,
               Hultgren,S.J. and Gordon,J.I.
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JAN-2006) Molecular Microbiology, Genetics, and
               Molecular Biology and Pharmacology, Washington University School of
               Medicine, 660 South Euclid Avenue, Saint Louis, MO 63110, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000243.
               Bacteria is available by contacting Scott Hultgren
               (hultgren@borcim.wustl.edu).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
228524	230065	+	1542	91209055	UTI89_C0217	-	16S ribosomal RNA
230134	230207	+	74	91209055	UTI89_C0219	-	^{14 Ile tRNA}
230253	230325	+	73	91209055	UTI89_C0220	-	^{02 Ala tRNA}
230503	233406	+	2904	91209055	UTI89_C0221	-	23S ribosomal RNA
233505	233624	+	120	91209055	UTI89_C0224	-	5S ribosomal RNA
233676	233749	+	74	91209055	UTI89_C0225	-	^{06 Asp tRNA}
241899	241972	+	74	91209055	UTI89_C0235	-	^{06 Asp tRNA}
295065	295137	+	73	91209055	UTI89_C0285	-	^{12 Thr tRNA}
305699	305771	+	73	91209055	UTI89_C0294	-	^{12 Thr tRNA}
569030	569103	+	74	91209055	UTI89_C0561	-	^{11 Arg tRNA}
671218	671289	-	72	91209055	UTI89_C0661	-	^{05 Gln tRNA}
671330	671401	-	72	91209055	UTI89_C0662	-	^{05 Gln tRNA}
671453	671526	-	74	91209055	UTI89_C0663	-	^{16 Met tRNA}
671545	671616	-	72	91209055	UTI89_C0664	-	^{05 Gln tRNA}
671654	671725	-	72	91209055	UTI89_C0665	-	^{05 Gln tRNA}
671752	671833	-	82	91209055	UTI89_C0666	-	^{15 Leu tRNA}
671847	671920	-	74	91209055	UTI89_C0667	-	^{16 Met tRNA}
744282	744354	+	73	91209055	UTI89_C0740	-	^{10 Lys tRNA}
744393	744465	+	73	91209055	UTI89_C0741	-	^{13 Val tRNA}
744471	744543	+	73	91209055	UTI89_C0742	-	^{10 Lys tRNA}
744598	744670	+	73	91209055	UTI89_C0743	-	^{13 Val tRNA}
744677	744749	+	73	91209055	UTI89_C0744	-	^{10 Lys tRNA}
744801	744873	+	73	91209055	UTI89_C0745	-	^{10 Lys tRNA}
744910	744982	+	73	91209055	UTI89_C0746	-	^{10 Lys tRNA}
895679	895763	-	85	91209055	UTI89_C0897	-	^{08 Ser tRNA}
1028950	1029034	-	85	91209055	UTI89_C1039	-	^{08 Ser tRNA}
1120468	1120541	+	74	91209055	UTI89_C1126	-	^{11 Arg tRNA}
1142535	1142619	-	85	91209055	UTI89_C1153	-	^{08 Ser tRNA}
1362337	1362418	-	82	91209055	UTI89_C1426	-	^{18 Tyr tRNA}
1362455	1362536	-	82	91209055	UTI89_C1427	-	^{18 Tyr tRNA}
1404628	1404700	+	73	91209055	UTI89_C1482	-	^{14 Ile tRNA}
1404801	1404874	+	74	91209055	UTI89_C1483	-	^{11 Arg tRNA}
1782194	1782267	+	74	91209055	UTI89_C1856	-	^{13 Val tRNA}
1782275	1782348	+	74	91209055	UTI89_C1857	-	^{13 Val tRNA}
2015566	2015649	-	84	91209055	UTI89_C2110	-	^{15 Leu tRNA}
2015665	2015735	-	71	91209055	UTI89_C2111	-	^{19 Cys tRNA}
2015792	2015864	-	73	91209055	UTI89_C2112	-	^{01 Gly tRNA}
2068722	2068808	-	87	91209055	UTI89_C2174	-	^{08 Ser tRNA}
2069800	2069872	+	73	91209055	UTI89_C2176	-	^{07 Asn tRNA}
2109697	2109769	-	73	91209055	UTI89_C2198	-	^{07 Asn tRNA}
2111515	2111587	+	73	91209055	UTI89_C2200	-	^{07 Asn tRNA}
2113924	2113996	+	73	91209055	UTI89_C2203	-	^{07 Asn tRNA}
2426261	2426334	+	74	91209055	UTI89_C2467	-	^{03 Pro tRNA}
2597297	2597368	+	72	91209055	UTI89_C2633	-	^{11 Arg tRNA}
2677965	2678037	-	73	91209055	UTI89_C2727	-	^{02 Ala tRNA}
2678080	2678152	-	73	91209055	UTI89_C2728	-	^{02 Ala tRNA}
2680851	2680923	+	73	91209055	UTI89_C2732	-	^{13 Val tRNA}
2680971	2681043	+	73	91209055	UTI89_C2733	-	^{13 Val tRNA}
2681093	2681165	+	73	91209055	UTI89_C2734	-	^{13 Val tRNA}
2681173	2681245	+	73	91209055	UTI89_C2735	-	^{10 Lys tRNA}
2870341	2870460	-	120	91209055	UTI89_C2917	-	5S ribosomal RNA
2870559	2873462	-	2904	91209055	UTI89_C2918	-	23S ribosomal RNA
2873659	2873731	-	73	91209055	UTI89_C2921	-	^{04 Glu tRNA}
2873817	2875358	-	1542	91209055	UTI89_C2922	-	16S ribosomal RNA
2976587	2976660	-	74	91209055	UTI89_C3053	-	^{11 Arg tRNA}
2976727	2976800	-	74	91209055	UTI89_C3054	-	^{11 Arg tRNA}
2976868	2976941	-	74	91209055	UTI89_C3055	-	^{11 Arg tRNA}
2976948	2977037	-	90	91209055	UTI89_C3056	-	^{08 Ser tRNA}
3101730	3101803	+	74	91209055	UTI89_C3187	-	^{16 Met tRNA}
3101840	3101913	+	74	91209055	UTI89_C3188	-	^{16 Met tRNA}
3101950	3102023	+	74	91209055	UTI89_C3189	-	^{16 Met tRNA}
3177834	3177904	-	71	91209055	UTI89_C3249	-	^{01 Gly tRNA}
3287922	3287994	+	73	91209055	UTI89_C3359	-	^{17 Phe tRNA}
3443408	3443480	+	73	91209055	UTI89_C3507	-	^{14 Ile tRNA}
3538051	3538124	-	74	91209055	UTI89_C3603	-	^{16 Met tRNA}
3541905	3541988	-	84	91209055	UTI89_C3606	-	^{15 Leu tRNA}
3641214	3641333	-	120	91209055	UTI89_C3714	-	5S ribosomal RNA
3641374	3641446	-	73	91209055	UTI89_C3715	-	^{12 Thr tRNA}
3641459	3641578	-	120	91209055	UTI89_C3716	-	5S ribosomal RNA
3641673	3644576	-	2904	91209055	UTI89_C3717	-	23S ribosomal RNA
3644763	3644835	-	73	91209055	UTI89_C3720	-	^{02 Ala tRNA}
3644881	3644954	-	74	91209055	UTI89_C3721	-	^{14 Ile tRNA}
3645023	3646564	-	1542	91209055	UTI89_C3722	-	16S ribosomal RNA
3689284	3689356	-	73	91209055	UTI89_C3796	-	^{12 Thr tRNA}
3689366	3689437	-	72	91209055	UTI89_C3797	-	^{01 Gly tRNA}
3689557	3689638	-	82	91209055	UTI89_C3798	-	^{18 Tyr tRNA}
3689650	3689722	-	73	91209055	UTI89_C3799	-	^{12 Thr tRNA}
3693188	3693307	-	120	91209055	UTI89_C3806	-	5S ribosomal RNA
3693402	3696305	-	2904	91209055	UTI89_C3807	-	23S ribosomal RNA
3696502	3696574	-	73	91209055	UTI89_C3810	-	^{04 Glu tRNA}
3696660	3698201	-	1542	91209055	UTI89_C3811	-	16S ribosomal RNA
3975878	3975951	-	74	91209055	UTI89_C4085	-	^{03 Pro tRNA}
4101848	4101938	+	91	91209055	UTI89_C4211	-	Sec tRNA
4202676	4204217	+	1542	91209055	UTI89_C4311	-	16S ribosomal RNA
4204303	4204375	+	73	91209055	UTI89_C4313	-	^{04 Glu tRNA}
4204572	4207475	+	2904	91209055	UTI89_C4314	-	23S ribosomal RNA
4207569	4207688	+	120	91209055	UTI89_C4317	-	5S ribosomal RNA
4207740	4207813	+	74	91209055	UTI89_C4318	-	^{06 Asp tRNA}
4207825	4207897	+	73	91209055	UTI89_C4319	-	^{20 Trp tRNA}
4242369	4242442	+	74	91209055	UTI89_C4354	-	^{11 Arg tRNA}
4242504	4242576	+	73	91209055	UTI89_C4355	-	^{09 His tRNA}
4242600	4242683	+	84	91209055	UTI89_C4356	-	^{15 Leu tRNA}
4242729	4242802	+	74	91209055	UTI89_C4357	-	^{03 Pro tRNA}
4321858	4323399	+	1542	91209055	UTI89_C4436	-	16S ribosomal RNA
4323468	4323541	+	74	91209055	UTI89_C4438	-	^{14 Ile tRNA}
4323587	4323659	+	73	91209055	UTI89_C4439	-	^{02 Ala tRNA}
4323846	4326749	+	2904	91209055	UTI89_C4440	-	23S ribosomal RNA
4326843	4326962	+	120	91209055	UTI89_C4442	-	5S ribosomal RNA
4456367	4457908	+	1542	91209055	UTI89_C4563	-	16S ribosomal RNA
4457994	4458066	+	73	91209055	UTI89_C4565	-	^{04 Glu tRNA}
4458263	4461166	+	2904	91209055	UTI89_C4566	-	23S ribosomal RNA
4461265	4461384	+	120	91209055	UTI89_C4569	-	5S ribosomal RNA
4634666	4634738	-	73	91209055	UTI89_C4731	-	^{17 Phe tRNA}
4664172	4664244	+	73	91209055	UTI89_C4763	-	^{01 Gly tRNA}
4664284	4664356	+	73	91209055	UTI89_C4764	-	^{01 Gly tRNA}
4664395	4664467	+	73	91209055	UTI89_C4765	-	^{01 Gly tRNA}
4778112	4778193	+	82	91209055	UTI89_C4877	-	^{15 Leu tRNA}
4983852	4983935	-	84	91209055	UTI89_C5075	-	^{15 Leu tRNA}
4983973	4984056	-	84	91209055	UTI89_C5076	-	^{15 Leu tRNA}
4984088	4984171	-	84	91209055	UTI89_C5077	-	^{15 Leu tRNA}