Материалы:NC 007974

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007974            2580084 bp    DNA     circular BCT 19-DEC-2006
   DEFINITION  Ralstonia metallidurans CH34 chromosome 2, complete sequence.
   ACCESSION   NC_007974
   VERSION     NC_007974.1  GI:94312547
   KEYWORDS    .
   SOURCE      Ralstonia metallidurans CH34
     ORGANISM  Ralstonia metallidurans CH34
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Cupriavidus.
   REFERENCE   1  (bases 1 to 2580084)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 2 of Ralstonia metallidurans CH34
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2580084)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2580084)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (18-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000353.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2351356
               Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov)
               Contacts: John J. Dunn (jdunn@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
1511	3037	+	1527	94312547	Rmet_R0070	-	16S ribosomal RNA
3102	3178	+	77	94312547	Rmet_R0071	-	^{14 Ile tRNA}
3190	3265	+	76	94312547	Rmet_R0072	-	^{02 Ala tRNA}
3548	6365	+	2818	94312547	Rmet_R0073	-	23S ribosomal RNA
6545	6658	+	114	94312547	Rmet_R0074	-	23S ribosomal RNA
326061	327587	+	1527	94312547	Rmet_R0075	-	16S ribosomal RNA
327652	327728	+	77	94312547	Rmet_R0076	-	^{14 Ile tRNA}
327740	327815	+	76	94312547	Rmet_R0077	-	^{02 Ala tRNA}
328098	330915	+	2818	94312547	Rmet_R0078	-	23S ribosomal RNA
331095	331208	+	114	94312547	Rmet_R0079	-	23S ribosomal RNA
855723	855799	+	77	94312547	Rmet_R0080	-	^{13 Val tRNA}
1032439	1032515	-	77	94312547	Rmet_R0081	-	^{11 Arg tRNA}
1033897	1033983	-	87	94312547	Rmet_R0082	-	^{15 Leu tRNA}
1258162	1258323	-	162	94312547	Rmet_R0083	-
2185643	2185742	+	100	94312547	Rmet_R0084	-
2185745	2185855	+	111	94312547	Rmet_R0085	-
2187248	2187334	-	87	94312547	Rmet_R0086	-	^{15 Leu tRNA}