Геном прокариот/Материалы:NC 008062

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   LOCUS       NC_008062            1196094 bp    DNA     circular BCT 19-JUN-2007
   DEFINITION  Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence.
   ACCESSION   NC_008062
   VERSION     NC_008062.1  GI:107028231
   KEYWORDS    .
   SOURCE      Burkholderia cenocepacia AU 1054
     ORGANISM  Burkholderia cenocepacia AU 1054
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 1196094)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 3 of Burkholderia cenocepacia AU
               1054
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1196094)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1196094)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000380.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3635680
               Source DNA and bacteria available from James M Tiedje
               (tiedjej@msu.edu)
               Contacts: James M Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
82819 82951 - 133 107028231 Bcen_R0081 -
83383 83507 + 125 107028231 Bcen_R0082 -
418326 419851 + 1526 107028231 Bcen_R0083 - 16S ribosomal RNA
419915 419991 + 77 107028231 Bcen_R0084 - 14 Ile tRNA
420030 420105 + 76 107028231 Bcen_R0085 - 02 Ala tRNA
420382 423262 + 2881 107028231 Bcen_R0086 - 23S ribosomal RNA
423417 423529 + 113 107028231 Bcen_R0087 - 5S ribosomal RNA
453685 453775 - 91 107028231 Bcen_R0088 - 08 Ser tRNA
483648 483722 - 75 107028231 Bcen_R0089 - 13 Val tRNA
507896 507972 + 77 107028231 Bcen_R0090 - 16 Met tRNA
588543 588636 + 94 107028231 Bcen_R0091 - 08 Ser tRNA
609911 609986 + 76 107028231 Bcen_R0092 - 02 Ala tRNA
610124 610199 + 76 107028231 Bcen_R0093 - 04 Glu tRNA
610278 610354 + 77 107028231 Bcen_R0094 - 06 Asp tRNA
610418 610493 + 76 107028231 Bcen_R0095 - 04 Glu tRNA
610573 610649 + 77 107028231 Bcen_R0096 - 06 Asp tRNA
610714 610789 + 76 107028231 Bcen_R0097 - 04 Glu tRNA
610862 610938 + 77 107028231 Bcen_R0098 - 06 Asp tRNA
741962 742048 + 87 107028231 Bcen_R0099 - 15 Leu tRNA
757574 757649 + 76 107028231 Bcen_R0100 - 13 Val tRNA
757673 757749 + 77 107028231 Bcen_R0101 - 06 Asp tRNA
860733 860835 + 103 107028231 Bcen_R0102 - SRP RNA; RNA component of signal recognition particle