Материалы:NC 008228

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   LOCUS       NC_008228            5187005 bp    DNA     circular BCT 30-JUN-2006
   DEFINITION  Pseudoalteromonas atlantica T6c, complete genome.
   ACCESSION   NC_008228
   VERSION     NC_008228.1  GI:109896332
   KEYWORDS    .
   SOURCE      Pseudoalteromonas atlantica T6c
     ORGANISM  Pseudoalteromonas atlantica T6c
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Pseudoalteromonadaceae; Pseudoalteromonas.
   REFERENCE   1  (bases 1 to 5187005)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudoalteromonas atlantica T6c
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5187005)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5187005)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000388.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000130
               Source DNA and bacteria available from Anna C. Karls
               (akarls@uga.edu)
               Contacts: Anna C. Karls (akarls@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
36085 37615 + 1531 109896332 Patl_R0001 - 16S ribosomal RNA
37720 37795 + 76 109896332 Patl_R0002 - 02 Ala tRNA
37814 37890 + 77 109896332 Patl_R0003 - 14 Ile tRNA
38270 41154 + 2885 109896332 Patl_R0004 - 23S ribosomal RNA
41317 41432 + 116 109896332 Patl_R0005 - 5S ribosomal RNA
88587 88662 - 76 109896332 Patl_R0006 - 17 Phe tRNA
384670 384746 - 77 109896332 Patl_R0007 - 11 Arg tRNA
458952 460482 + 1531 109896332 Patl_R0008 - 16S ribosomal RNA
460587 460662 + 76 109896332 Patl_R0009 - 02 Ala tRNA
460681 460757 + 77 109896332 Patl_R0010 - 14 Ile tRNA
461137 464021 + 2885 109896332 Patl_R0011 - 23S ribosomal RNA
464285 464400 + 116 109896332 Patl_R0012 - 5S ribosomal RNA
677910 677986 + 77 109896332 Patl_R0013 - 20 Trp tRNA
820728 821023 + 296 109896332 Patl_R0014 - RNaseP RNA
915633 915722 + 90 109896332 Patl_R0015 - 08 Ser tRNA
1202293 1203823 + 1531 109896332 Patl_R0016 - 16S ribosomal RNA
1203928 1204003 + 76 109896332 Patl_R0017 - 02 Ala tRNA
1204022 1204098 + 77 109896332 Patl_R0018 - 14 Ile tRNA
1204478 1207362 + 2885 109896332 Patl_R0019 - 23S ribosomal RNA
1207525 1207640 + 116 109896332 Patl_R0020 - 5S ribosomal RNA
1380226 1380383 - 158 109896332 Patl_R0021 -
1385058 1385134 - 77 109896332 Patl_R0022 - 16 Met tRNA
1609448 1610978 + 1531 109896332 Patl_R0023 - 16S ribosomal RNA
1611083 1611158 + 76 109896332 Patl_R0024 - 02 Ala tRNA
1611177 1611253 + 77 109896332 Patl_R0025 - 14 Ile tRNA
1611633 1614517 + 2885 109896332 Patl_R0026 - 23S ribosomal RNA
1614680 1614795 + 116 109896332 Patl_R0027 - 5S ribosomal RNA
1619302 1619406 + 105 109896332 Patl_R0028 -
1623355 1623431 + 77 109896332 Patl_R0029 - 20 Trp tRNA
1882865 1882949 + 85 109896332 Patl_R0030 - 15 Leu tRNA
2026333 2026409 + 77 109896332 Patl_R0031 - 16 Met tRNA
2032735 2032850 + 116 109896332 Patl_R0032 -
2078340 2078693 - 354 109896332 Patl_R0033 - tmRNA
2299796 2299872 + 77 109896332 Patl_R0034 - 03 Pro tRNA
2337564 2337664 + 101 109896332 Patl_R0035 -
2725601 2725677 - 77 109896332 Patl_R0036 - 16 Met tRNA
2726512 2726588 - 77 109896332 Patl_R0037 - 16 Met tRNA
2877458 2877534 - 77 109896332 Patl_R0038 - 06 Asp tRNA
2877561 2877637 - 77 109896332 Patl_R0039 - 06 Asp tRNA
2877670 2877746 - 77 109896332 Patl_R0040 - 06 Asp tRNA
2932694 2932825 + 132 109896332 Patl_R0041 -
2976579 2976665 - 87 109896332 Patl_R0042 - 15 Leu tRNA
2976717 2976790 - 74 109896332 Patl_R0043 - 19 Cys tRNA
2976865 2976939 - 75 109896332 Patl_R0044 - 01 Gly tRNA
2981810 2981901 - 92 109896332 Patl_R0045 - 08 Ser tRNA
2981961 2982052 - 92 109896332 Patl_R0046 - 08 Ser tRNA
3042519 3042595 - 77 109896332 Patl_R0047 - 13 Val tRNA
3111841 3111915 + 75 109896332 Patl_R0048 - 05 Gln tRNA
3120067 3120143 + 77 109896332 Patl_R0049 - 16 Met tRNA
3120190 3120274 + 85 109896332 Patl_R0050 - 15 Leu tRNA
3120279 3120353 + 75 109896332 Patl_R0051 - 05 Gln tRNA
3120390 3120464 + 75 109896332 Patl_R0052 - 05 Gln tRNA
3535582 3535657 - 76 109896332 Patl_R0053 - 04 Glu tRNA
3535988 3536063 - 76 109896332 Patl_R0054 - 04 Glu tRNA
3536243 3536318 - 76 109896332 Patl_R0055 - 04 Glu tRNA
3536466 3536541 - 76 109896332 Patl_R0056 - 02 Ala tRNA
3538709 3538784 + 76 109896332 Patl_R0057 - 13 Val tRNA
3538942 3539017 + 76 109896332 Patl_R0058 - 13 Val tRNA
3539083 3539158 + 76 109896332 Patl_R0059 - 13 Val tRNA
3560104 3560179 - 76 109896332 Patl_R0060 - 10 Lys tRNA
3560215 3560290 - 76 109896332 Patl_R0061 - 10 Lys tRNA
3590980 3591056 + 77 109896332 Patl_R0062 - 07 Asn tRNA
3591151 3591227 + 77 109896332 Patl_R0063 - 07 Asn tRNA
3642021 3642097 - 77 109896332 Patl_R0064 - 11 Arg tRNA
3642145 3642221 - 77 109896332 Patl_R0065 - 11 Arg tRNA
3642328 3642418 - 91 109896332 Patl_R0066 - 08 Ser tRNA
3740303 3740377 + 75 109896332 Patl_R0067 - 11 Arg tRNA
3782051 3782135 - 85 109896332 Patl_R0068 - 15 Leu tRNA
3782139 3782214 - 76 109896332 Patl_R0069 - 09 His tRNA
3782243 3782319 - 77 109896332 Patl_R0070 - 11 Arg tRNA
3782350 3782426 - 77 109896332 Patl_R0071 - 03 Pro tRNA
4180208 4180282 - 75 109896332 Patl_R0072 - 01 Gly tRNA
4180333 4180407 - 75 109896332 Patl_R0073 - 01 Gly tRNA
4278490 4278575 - 86 109896332 Patl_R0074 - 15 Leu tRNA
4810989 4811064 - 76 109896332 Patl_R0075 - 12 Thr tRNA
4811071 4811145 - 75 109896332 Patl_R0076 - 01 Gly tRNA
4811184 4811268 - 85 109896332 Patl_R0077 - 18 Tyr tRNA
4811276 4811351 - 76 109896332 Patl_R0078 - 12 Thr tRNA
4833103 4833218 - 116 109896332 Patl_R0079 - 5S ribosomal RNA
4833482 4836366 - 2885 109896332 Patl_R0080 - 23S ribosomal RNA
4836746 4836822 - 77 109896332 Patl_R0081 - 14 Ile tRNA
4836841 4836916 - 76 109896332 Patl_R0082 - 02 Ala tRNA
4837021 4838551 - 1531 109896332 Patl_R0083 - 16S ribosomal RNA
5087974 5088049 + 76 109896332 Patl_R0084 - 12 Thr tRNA