Геном прокариот/Материалы:NC 008254

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   LOCUS       NC_008254            4412446 bp    DNA     circular BCT 25-JUL-2006
   DEFINITION  Mesorhizobium sp. BNC1, complete genome.
   ACCESSION   NC_008254
   VERSION     NC_008254.1  GI:110632362
   KEYWORDS    .
   SOURCE      Mesorhizobium sp. BNC1
     ORGANISM  Mesorhizobium sp. BNC1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Phyllobacteriaceae; Mesorhizobium.
   REFERENCE   1  (bases 1 to 4412446)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Mesorhizobium sp. BNC1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4412446)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4412446)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N.L. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000390.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662197
               Source DNA and bacteria available from Harvey Bolton JR.
               (harvey.bolton@pnl.gov)
               Contacts: Harvey Bolton JR. (harvey.bolton@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Other accessions for this project are: CP000389 (Plasmid1),
               CP000391 (Plasmid2), CP000392 (Plasmid3).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
78675 78750 - 76 110632362 Meso_R0001 - 12 Thr tRNA
115580 115655 - 76 110632362 Meso_R0002 - 17 Phe tRNA
126698 126772 - 75 110632362 Meso_R0003 - 01 Gly tRNA
215234 215310 + 77 110632362 Meso_R0004 - 09 His tRNA
282215 282289 + 75 110632362 Meso_R0005 - 12 Thr tRNA
392373 392449 - 77 110632362 Meso_R0006 - 11 Arg tRNA
521127 521200 + 74 110632362 Meso_R0007 - 05 Gln tRNA
857350 857424 + 75 110632362 Meso_R0008 - 05 Gln tRNA
943686 943762 - 77 110632362 Meso_R0009 - 03 Pro tRNA
978231 978304 - 74 110632362 Meso_R0010 - Xaa tRNA
1034960 1035050 - 91 110632362 Meso_R0011 - 08 Ser tRNA
1118778 1118879 - 102 110632362 Meso_R0012 -
1118882 1118967 - 86 110632362 Meso_R0013 -
1148801 1148885 + 85 110632362 Meso_R0014 - 15 Leu tRNA
1190473 1190557 + 85 110632362 Meso_R0015 - 18 Tyr tRNA
1192249 1192322 + 74 110632362 Meso_R0016 - 01 Gly tRNA
1206280 1206356 + 77 110632362 Meso_R0017 - 03 Pro tRNA
1206735 1206811 + 77 110632362 Meso_R0018 - 11 Arg tRNA
1260786 1260862 + 77 110632362 Meso_R0019 - 03 Pro tRNA
1289535 1289606 - 72 110632362 Meso_R0020 - Xaa tRNA
1344915 1344991 - 77 110632362 Meso_R0021 - 06 Asp tRNA
1345179 1345254 + 76 110632362 Meso_R0022 - 13 Val tRNA
1434493 1434578 + 86 110632362 Meso_R0023 - 15 Leu tRNA
1555124 1555198 - 75 110632362 Meso_R0024 - 13 Val tRNA
1611506 1611581 - 76 110632362 Meso_R0025 - 10 Lys tRNA
1666234 1666309 - 76 110632362 Meso_R0026 - 12 Thr tRNA
1695913 1696002 - 90 110632362 Meso_R0027 - 08 Ser tRNA
1871878 1872209 + 332 110632362 Meso_R0028 - tmRNA
1894028 1894103 + 76 110632362 Meso_R0029 - 10 Lys tRNA
1916151 1916235 - 85 110632362 Meso_R0030 - 15 Leu tRNA
1960296 1960371 - 76 110632362 Meso_R0031 - 20 Trp tRNA
2017928 2018001 - 74 110632362 Meso_R0032 - 19 Cys tRNA
2038749 2038823 - 75 110632362 Meso_R0033 - 07 Asn tRNA
2063045 2063120 + 76 110632362 Meso_R0034 - 04 Glu tRNA
2165614 2165991 - 378 110632362 Meso_R0035 - RNaseP RNA
2215550 2215753 + 204 110632362 Meso_R0036 -
2226784 2226859 + 76 110632362 Meso_R0037 - 16 Met tRNA
2367051 2367127 + 77 110632362 Meso_R0038 - 16 Met tRNA
2734071 2734147 - 77 110632362 Meso_R0039 - 16 Met tRNA
2734276 2734390 - 115 110632362 Meso_R0040 - 5S ribosomal RNA
2734616 2737490 - 2875 110632362 Meso_R0041 - 23S ribosomal RNA
2737809 2737884 - 76 110632362 Meso_R0042 - 02 Ala tRNA
2737973 2738049 - 77 110632362 Meso_R0043 - 14 Ile tRNA
2738351 2739809 - 1459 110632362 Meso_R0044 - 16S ribosomal RNA
2750090 2750207 + 118 110632362 Meso_R0045 -
2937284 2937539 - 256 110632362 Meso_R0046 -
2941844 2942047 - 204 110632362 Meso_R0047 -
2997010 2997084 + 75 110632362 Meso_R0048 - 13 Val tRNA
3251583 3251659 - 77 110632362 Meso_R0049 - 16 Met tRNA
3251788 3251902 - 115 110632362 Meso_R0050 - 23S ribosomal RNA
3252128 3255002 - 2875 110632362 Meso_R0051 - 23S ribosomal RNA
3255321 3255396 - 76 110632362 Meso_R0052 - 02 Ala tRNA
3255485 3255561 - 77 110632362 Meso_R0053 - 14 Ile tRNA
3255863 3257321 - 1459 110632362 Meso_R0054 - 16S ribosomal RNA
3297018 3297102 - 85 110632362 Meso_R0055 - 15 Leu tRNA
3330912 3330988 - 77 110632362 Meso_R0056 - 11 Arg tRNA
3414950 3415025 - 76 110632362 Meso_R0057 - 04 Glu tRNA
3522172 3522274 + 103 110632362 Meso_R0058 -
3538363 3538437 + 75 110632362 Meso_R0059 - 01 Gly tRNA
3645605 3645680 - 76 110632362 Meso_R0060 - 02 Ala tRNA
3739038 3739127 + 90 110632362 Meso_R0061 - 08 Ser tRNA
3801882 3802094 + 213 110632362 Meso_R0062 -
3894684 3894759 + 76 110632362 Meso_R0063 - 02 Ala tRNA
4214708 4214784 - 77 110632362 Meso_R0064 - 11 Arg tRNA
4215011 4215075 - 65 110632362 Meso_R0065 - 11 Arg tRNA
4263184 4263268 + 85 110632362 Meso_R0066 - 15 Leu tRNA
4285444 4285533 - 90 110632362 Meso_R0067 - 08 Ser tRNA
4368582 4368685 + 104 110632362 Meso_R0068 - SRP RNA