Геном прокариот/Материалы:NC 008261

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008261            3256683 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Clostridium perfringens ATCC 13124, complete genome.
   ACCESSION   NC_008261
   VERSION     NC_008261.1  GI:110798562
   KEYWORDS    .
   SOURCE      Clostridium perfringens ATCC 13124
     ORGANISM  Clostridium perfringens ATCC 13124
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Clostridium.
   REFERENCE   1  (bases 1 to 3256683)
     AUTHORS   Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R.,
               DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M.,
               Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C.,
               Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I.,
               Watkins,K.L., Mulligan,S., Benton,J., Radune,D., Fisher,D.J.,
               Atkins,H.S., Hiscox,T., Jost,B.H., Billington,S.J., Songer,J.G.,
               McClane,B.A., Titball,R.W., Rood,J.I., Melville,S.B. and
               Paulsen,I.T.
     TITLE     Skewed genomic variability in strains of the toxigenic bacterial
               pathogen, Clostridium perfringens
     JOURNAL   Genome Res. 16 (8), 1031-1040 (2006)
      PUBMED   16825665
   REFERENCE   2  (bases 1 to 3256683)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-JUL-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3256683)
     AUTHORS   Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R.,
               DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M.,
               Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C.,
               Rosovitz,M., Sullivan,S.A., Khouri,H.M., Dimitrov,G., Watkins,K.L.,
               Mulligan,S., Benton,J.L., Fisher,D.J., Atkins,H.S., Hiscox,T.,
               Titball,R.W., Rood,J.I., Melville,S. and Paulsen,I.T.
     TITLE     Direct Submission
     JOURNAL   Submitted (20-JAN-2006) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000246.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
10167	11688	+	1522	110798562	CPF_2998	-	16S ribosomal RNA
11869	14777	+	2909	110798562	CPF_2999	-	23S ribosomal RNA
14869	14996	+	128	110798562	CPF_3000	-	5S ribosomal RNA
14992	15068	+	77	110798562	CPF_0008	-	^{16 Met tRNA}
15074	15149	+	76	110798562	CPF_0009	-	^{02 Ala tRNA}
23280	23370	+	91	110798562	CPF_0016	-	^{08 Ser tRNA}
23404	23494	+	91	110798562	CPF_0017	-	^{08 Ser tRNA}
24130	24220	+	91	110798562	CPF_0019	-	^{08 Ser tRNA}
24226	24316	+	91	110798562	CPF_0020	-	^{08 Ser tRNA}
39585	39661	+	77	110798562	CPF_0031	-	^{11 Arg tRNA}
42757	42831	+	75	110798562	CPF_0035	-	^{11 Arg tRNA}
54210	54299	+	90	110798562	CPF_0048	-	^{08 Ser tRNA}
72550	74066	+	1517	110798562	CPF_3001	-	16S ribosomal RNA
74252	77159	+	2908	110798562	CPF_3002	-	23S ribosomal RNA
77208	77334	+	127	110798562	CPF_3003	-	5S ribosomal RNA
77330	77405	+	76	110798562	CPF_0068	-	^{10 Lys tRNA}
82381	83902	+	1522	110798562	CPF_3004	-	16S ribosomal RNA
84083	86990	+	2908	110798562	CPF_3005	-	23S ribosomal RNA
87039	87165	+	127	110798562	CPF_3006	-	5S ribosomal RNA
87165	87239	+	75	110798562	CPF_0073	-	^{07 Asn tRNA}
231432	232953	+	1522	110798562	CPF_3007	-	16S ribosomal RNA
233134	236041	+	2908	110798562	CPF_3008	-	23S ribosomal RNA
236091	236217	+	127	110798562	CPF_3009	-	5S ribosomal RNA
236219	236294	+	76	110798562	CPF_0193	-	^{17 Phe tRNA}
279286	279361	-	76	110798562	CPF_0229	-	^{16 Met tRNA}
310698	312219	+	1522	110798562	CPF_3010	-	16S ribosomal RNA
312400	315307	+	2908	110798562	CPF_3011	-	23S ribosomal RNA
315357	315483	+	127	110798562	CPF_3012	-	5S ribosomal RNA
315485	315560	+	76	110798562	CPF_0260	-	^{17 Phe tRNA}
328323	328398	-	76	110798562	CPF_0272	-	^{03 Pro tRNA}
580328	580403	+	76	110798562	CPF_0489	-	^{16 Met tRNA}
683148	684669	+	1522	110798562	CPF_3013	-	16S ribosomal RNA
684850	687757	+	2908	110798562	CPF_3014	-	23S ribosomal RNA
687807	687933	+	127	110798562	CPF_3015	-	5S ribosomal RNA
687930	688004	+	75	110798562	CPF_0573	-	^{04 Glu tRNA}
810869	810957	-	89	110798562	CPF_0679	-	^{15 Leu tRNA}
1098850	1098933	-	84	110798562	CPF_0944	-	^{01 Gly tRNA}
1099769	1099843	+	75	110798562	CPF_0946	-	^{20 Trp tRNA}
1708703	1709063	-	361	110798562	CPF_3016	-	10Sa RNA (tmRNA)
1850167	1850253	-	87	110798562	CPF_1633	-	^{15 Leu tRNA}
2351711	2351801	+	91	110798562	CPF_2120	-	Sec tRNA
2394610	2394684	-	75	110798562	CPF_2153	-	^{19 Cys tRNA}
2394690	2394763	-	74	110798562	CPF_2154	-	^{01 Gly tRNA}
2394767	2394841	-	75	110798562	CPF_2155	-	^{01 Gly tRNA}
2394847	2394922	-	76	110798562	CPF_2156	-	^{17 Phe tRNA}
2494499	2494584	-	86	110798562	CPF_2246	-	^{15 Leu tRNA}
2694346	2694421	-	76	110798562	CPF_2419	-	^{20 Trp tRNA}
2694450	2694525	-	76	110798562	CPF_2420	-	^{20 Trp tRNA}
2714178	2714263	-	86	110798562	CPF_2436	-	^{18 Tyr tRNA}
2714269	2714344	-	76	110798562	CPF_2437	-	^{12 Thr tRNA}
2714370	2714455	-	86	110798562	CPF_2438	-	^{18 Tyr tRNA}
2714461	2714536	-	76	110798562	CPF_2439	-	^{12 Thr tRNA}
2714555	2714630	-	76	110798562	CPF_2440	-	^{13 Val tRNA}
2714635	2714720	-	86	110798562	CPF_2441	-	^{18 Tyr tRNA}
2714726	2714801	-	76	110798562	CPF_2442	-	^{12 Thr tRNA}
2778383	2778457	-	75	110798562	CPF_2505	-	^{07 Asn tRNA}
2778510	2781417	-	2908	110798562	CPF_3017	-	23S ribosomal RNA
2781517	2781593	-	77	110798562	CPF_2506	-	^{14 Ile tRNA}
2781599	2781674	-	76	110798562	CPF_2507	-	^{02 Ala tRNA}
2781831	2783352	-	1522	110798562	CPF_3018	-	16S ribosomal RNA
2788043	2788119	-	77	110798562	CPF_2513	-	^{11 Arg tRNA}
2788170	2788243	-	74	110798562	CPF_2514	-	^{01 Gly tRNA}
2788247	2788321	-	75	110798562	CPF_2515	-	^{01 Gly tRNA}
2788345	2788428	-	84	110798562	CPF_2516	-	^{15 Leu tRNA}
2788439	2788514	-	76	110798562	CPF_2517	-	^{10 Lys tRNA}
2788522	2788596	-	75	110798562	CPF_2518	-	^{05 Gln tRNA}
2788602	2788677	-	76	110798562	CPF_2519	-	^{09 His tRNA}
2788682	2788758	-	77	110798562	CPF_2520	-	^{11 Arg tRNA}
2788794	2788867	-	74	110798562	CPF_2521	-	^{01 Gly tRNA}
2788872	2788947	-	76	110798562	CPF_2522	-	^{03 Pro tRNA}
2788953	2789029	-	77	110798562	CPF_2523	-	^{11 Arg tRNA}
2789105	2789178	-	74	110798562	CPF_2524	-	^{01 Gly tRNA}
2789183	2789257	-	75	110798562	CPF_2525	-	^{01 Gly tRNA}
2789284	2789367	-	84	110798562	CPF_2526	-	^{15 Leu tRNA}
2789378	2789453	-	76	110798562	CPF_2527	-	^{10 Lys tRNA}
2789473	2789548	-	76	110798562	CPF_2528	-	^{10 Lys tRNA}
2789555	2789629	-	75	110798562	CPF_2529	-	^{05 Gln tRNA}
2789633	2789708	-	76	110798562	CPF_2530	-	^{09 His tRNA}
2789713	2789789	-	77	110798562	CPF_2531	-	^{11 Arg tRNA}
2789869	2789942	-	74	110798562	CPF_2532	-	^{01 Gly tRNA}
2789947	2790022	-	76	110798562	CPF_2533	-	^{03 Pro tRNA}
2888912	2888987	-	76	110798562	CPF_2619	-	^{10 Lys tRNA}
2889032	2889105	-	74	110798562	CPF_2620	-	^{01 Gly tRNA}
2889171	2889245	-	75	110798562	CPF_2621	-	^{05 Gln tRNA}
2889249	2889325	-	77	110798562	CPF_2622	-	^{11 Arg tRNA}
2892507	2892582	-	76	110798562	CPF_2626	-	^{10 Lys tRNA}
2892601	2892674	-	74	110798562	CPF_2627	-	^{01 Gly tRNA}
2892680	2892754	-	75	110798562	CPF_2628	-	^{01 Gly tRNA}
2892772	2892845	-	74	110798562	CPF_2629	-	^{01 Gly tRNA}
2892851	2892934	-	84	110798562	CPF_2630	-	^{15 Leu tRNA}
2993234	2993309	-	76	110798562	CPF_2731	-	^{12 Thr tRNA}
3027823	3027897	-	75	110798562	CPF_2769	-	^{19 Cys tRNA}
3027902	3027977	-	76	110798562	CPF_2770	-	^{17 Phe tRNA}
3029037	3029158	-	122	110798562	CPF_2770a	-	5S ribosomal RNA
3029161	3029235	-	75	110798562	CPF_2771	-	^{07 Asn tRNA}
3029234	3029360	-	127	110798562	CPF_3019	-	5S ribosomal RNA
3029408	3032314	-	2907	110798562	CPF_3020	-	23S ribosomal RNA
3032414	3032490	-	77	110798562	CPF_2772	-	^{14 Ile tRNA}
3032496	3032571	-	76	110798562	CPF_2773	-	^{02 Ala tRNA}
3032728	3034249	-	1522	110798562	CPF_3021	-	16S ribosomal RNA
3043265	3043339	-	75	110798562	CPF_2780	-	^{07 Asn tRNA}
3056396	3056484	-	89	110798562	CPF_2790	-	^{15 Leu tRNA}
3056501	3056577	-	77	110798562	CPF_2791	-	^{16 Met tRNA}
3056581	3056656	-	76	110798562	CPF_2792	-	^{16 Met tRNA}
3056664	3056752	-	89	110798562	CPF_2793	-	^{15 Leu tRNA}
3056769	3056845	-	77	110798562	CPF_2794	-	^{16 Met tRNA}
3056849	3056924	-	76	110798562	CPF_2795	-	^{16 Met tRNA}
3056931	3057019	-	89	110798562	CPF_2796	-	^{15 Leu tRNA}
3215484	3215559	-	76	110798562	CPF_2941	-	^{12 Thr tRNA}
3215563	3215639	-	77	110798562	CPF_2942	-	^{06 Asp tRNA}
3215651	3215726	-	76	110798562	CPF_2943	-	^{13 Val tRNA}
3215734	3215808	-	75	110798562	CPF_2944	-	^{04 Glu tRNA}
3215814	3215890	-	77	110798562	CPF_2945	-	^{06 Asp tRNA}
3215905	3215980	-	76	110798562	CPF_2946	-	^{13 Val tRNA}
3215987	3216061	-	75	110798562	CPF_2947	-	^{04 Glu tRNA}
3216069	3216145	-	77	110798562	CPF_2948	-	^{06 Asp tRNA}
3216159	3216234	-	76	110798562	CPF_2949	-	^{13 Val tRNA}
3216239	3216313	-	75	110798562	CPF_2950	-	^{04 Glu tRNA}