Геном прокариот/Материалы:NC 008278

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008278            7497934 bp    DNA     circular BCT 13-SEP-2006
   DEFINITION  Frankia alni ACN14a, complete genome.
   ACCESSION   NC_008278
   VERSION     NC_008278.1  GI:111219505
   KEYWORDS    .
   SOURCE      Frankia alni ACN14a
     ORGANISM  Frankia alni ACN14a
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Frankiaceae; Frankia.
   REFERENCE   1  (bases 1 to 7497934)
     AUTHORS   Normand,P., Lapierre,P., Tisa,L., Gogarten,J.P., Alloisio,N.,
               Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N.,
               Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N.,
               Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L.,
               Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E.,
               Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z.,
               Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D.,
               Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R.
     TITLE     plant biogeography
     JOURNAL   Unpublished
     REMARK    1. UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et
               Sante Universite Lyon I, Villeurbanne 69622 cedex, France; 2.
               Department of Molecular and Cell Biology, University of
               Connecticut, Storrs, CT 06279 3. Department of Microbiology,
               University of New Hampshire, Durham, NH, 03824. 4. Department of
               Plant Sciences, University of California, Davis, CA 95616 5.
               INRA-URGV, 2 rue Gaston Cremieux BP5708 91057 Evry cedex, France 6.
               Genoscope, Centre National de Sequenage, 2 rue Gaston Cremieux
               BP5706 91057 Evry cedex, France. 7. Genoscope, CNRS-UMR 8030,
               Atelier de Genomique Comparative, 2 rue Gaston Cremieux BP5706
               91006 Evry cedex, France 8. Bioinformatics and Evolutionary
               Genomics Laboratory, UMR CNRS 5558, Universite Lyon I, Villeurbanne
               69622 cedex, France 9. DOE Joint Genome Institute, 2800 Mitchell
               Drive, Walnut Creek, CA 94598 10. Departments of Botany and
               Biochemistry, Cellular & Molecular Biology and The Genome Science &
               Technology Program, The University of Tennessee, Knoxville, TN
               37996 11. UPSC, Dept of Plant Physiology, Ume University, S-90187
               Ume, Sweden 12. Instituto de Biologia Molecular e Celular,
               Microbiologia Celular e Aplicada, Rua do Campo Alegre, 823,
               4150-180 Porto, Portugal. 13. Clemson University Genomics
               Institute, Room 304 Biosystems Research Complex, Clemson, SC 29634
               14. Departamento de Ciencia y Tecnologa, Universidad Nacional de
               Quilmes, Saenz Pea 180 Bernal B1876BXD Argentina
   REFERENCE   2  (bases 1 to 7497934)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-AUG-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 7497934)
     AUTHORS   Genoscope.
     TITLE     Direct Submission
     JOURNAL   Submitted (02-AUG-2006) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CT573213.
               Annotation data relative to BLAST similarities, COG assignations,
               enzymatic function prediction (PRIAM software), TMHMM and SignalP
               predictions, and synteny results (Syntonizer software) are
               available in FrankiaScope database via the MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage/frankia.
               Each annotation includes a confidence level as follow: 1 : Function
               experimentally demonstrated in the studied organism 2a : Function
               of homologous gene experimentally demonstrated in an other organism
               2b : Function of strongly homologous gene
               3 : Function proposed based on presence of conserved amino acid
               motif, structural feature or limited homology
               4 : Homologs of previously reported genes of unknown function 5 :
               No homology to any previously reported sequences 6 : Doubtful CDS
               7 : Gene remnant.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12962	13035	+	74	111219505	FRAALtRNA1	-	^{14 Ile tRNA}
137250	137322	+	73	111219505	FRAALtRNA2	-	^{04 Glu tRNA}
177989	178063	+	75	111219505	FRAALtRNA3	-	^{06 Asp tRNA}
178115	178191	+	77	111219505	FRAALtRNA4	-	^{17 Phe tRNA}
204978	205048	+	71	111219505	FRAALtRNA5	-	Xaa tRNA
546902	546977	-	76	111219505	FRAALtRNA46	-	^{10 Lys tRNA}
674539	674623	+	85	111219505	FRAALtRNA6	-	^{08 Ser tRNA}
699770	699859	-	90	111219505	FRAALtRNA45	-	^{08 Ser tRNA}
706405	706576	-	172	111219505	FRAALmisc_RNA_5	-	ydaO-yuaA
873916	874014	+	99	111219505	FRAALmisc_RNA_11	-	THI
878235	878307	+	73	111219505	FRAALtRNA7	-	^{11 Arg tRNA}
973389	973482	-	94	111219505	FRAALtRNA44	-	^{08 Ser tRNA}
980960	981032	+	73	111219505	FRAALtRNA8	-	^{11 Arg tRNA}
1131905	1131989	+	85	111219505	FRAALtRNA9	-	^{18 Tyr tRNA}
1136365	1136440	+	76	111219505	FRAALtRNA10	-	^{12 Thr tRNA}
1136542	1136618	+	77	111219505	FRAALtRNA11	-	^{16 Met tRNA}
1139853	1139925	+	73	111219505	FRAALtRNA12	-	^{20 Trp tRNA}
1476388	1476755	+	368	111219505	FRAALmisc_RNA_8	-	tmRNA
1621651	1621734	-	84	111219505	FRAALtRNA43	-	^{15 Leu tRNA}
1668077	1668201	-	125	111219505	FRAALmisc_RNA_10	-	THI
1865012	1865087	-	76	111219505	FRAALtRNA42	-	^{10 Lys tRNA}
1890856	1890931	-	76	111219505	FRAALtRNA41	-	^{09 His tRNA}
1979427	1979502	-	76	111219505	FRAALtRNA40	-	^{11 Arg tRNA}
2068142	2068212	-	71	111219505	FRAALtRNA39	-	^{01 Gly tRNA}
2068260	2068335	+	76	111219505	FRAALtRNA13	-	^{03 Pro tRNA}
2110343	2110419	+	77	111219505	FRAALtRNA14	-	^{02 Ala tRNA}
2322222	2322296	-	75	111219505	FRAALtRNA38	-	^{13 Val tRNA}
2322310	2322381	-	72	111219505	FRAALtRNA37	-	^{19 Cys tRNA}
2322424	2322496	-	73	111219505	FRAALtRNA36	-	^{01 Gly tRNA}
2325024	2325095	+	72	111219505	FRAALtRNA15	-	^{13 Val tRNA}
2443756	2444106	-	351	111219505	FRAALmisc_RNA_7	-	RNaseP_bact_a
2466719	2466792	-	74	111219505	FRAALtRNA35	-	^{03 Pro tRNA}
2716187	2716271	+	85	111219505	FRAALtRNA16	-	^{15 Leu tRNA}
4004615	4004893	+	279	111219505	FRAALmisc_RNA_3	-	Cobalamin
4812206	4812404	-	199	111219505	FRAALmisc_RNA_2	-	Cobalamin
5017631	5017703	+	73	111219505	FRAALtRNA17	-	^{15 Leu tRNA}
5477822	5477893	-	72	111219505	FRAALtRNA34	-	^{13 Val tRNA}
5629512	5629631	-	120	111219505	FRAAL_5S_2	-	ribosomal RNA 5S
5629705	5632810	-	3106	111219505	FRAAL_23S_2	-	ribosomal RNA 23S
5633232	5634741	-	1510	111219505	FRAAL_16S_2	-	ribosomal RNA 16S
5661909	5662038	-	130	111219505	FRAALmisc_RNA_9	-	RFN
5707959	5708031	+	73	111219505	FRAALtRNA18	-	^{07 Asn tRNA}
5904763	5904836	-	74	111219505	FRAALtRNA33	-	^{16 Met tRNA}
6318948	6319023	-	76	111219505	FRAALtRNA32	-	^{04 Glu tRNA}
6319118	6319189	-	72	111219505	FRAALtRNA31	-	^{05 Gln tRNA}
6357240	6357359	-	120	111219505	FRAAL_5S_1	-	ribosomal RNA 5S
6357433	6360538	-	3106	111219505	FRAAL_23S_1	-	ribosomal RNA 23S
6360960	6362469	-	1510	111219505	FRAAL_16S_1	-	ribosomal RNA 16S
6456587	6456658	+	72	111219505	FRAALtRNA19	-	^{11 Arg tRNA}
6532197	6532273	-	77	111219505	FRAALtRNA30	-	^{16 Met tRNA}
6755294	6755371	-	78	111219505	FRAALtRNA29	-	^{15 Leu tRNA}
6816322	6816393	+	72	111219505	FRAALtRNA20	-	^{05 Gln tRNA}
6858396	6858469	+	74	111219505	FRAALtRNA21	-	^{02 Ala tRNA}
6999704	6999793	-	90	111219505	FRAALmisc_RNA_4	-	gcvT
7056166	7056238	+	73	111219505	FRAALtRNA22	-	^{12 Thr tRNA}
7120303	7120379	-	77	111219505	FRAALtRNA28	-	^{03 Pro tRNA}
7167643	7167714	+	72	111219505	FRAALtRNA23	-	^{12 Thr tRNA}
7196302	7196390	-	89	111219505	FRAALtRNA27	-	Xaa tRNA
7224368	7224438	-	71	111219505	FRAALtRNA26	-	^{01 Gly tRNA}
7256170	7256367	+	198	111219505	FRAALmisc_RNA_6	-	ydaO-yuaA
7305359	7305465	+	107	111219505	FRAALmisc_RNA_1	-	S_box
7354947	7355029	-	83	111219505	FRAALtRNA25	-	^{15 Leu tRNA}
7432405	7432477	-	73	111219505	FRAALtRNA24	-	^{02 Ala tRNA}