Геном прокариот/Материалы:NC 008312

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008312            7750108 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Trichodesmium erythraeum IMS101, complete genome.
   ACCESSION   NC_008312
   VERSION     NC_008312.1  GI:113473942
   KEYWORDS    .
   SOURCE      Trichodesmium erythraeum IMS101
     ORGANISM  Trichodesmium erythraeum IMS101
               Bacteria; Cyanobacteria; Oscillatoriales; Trichodesmium.
   REFERENCE   1  (bases 1 to 7750108)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Trichodesmium erythraeum IMS101
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 7750108)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 7750108)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000393.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662189
               Source DNA and bacteria available from John B. Waterbury
               (jwaterbury@whoi.edu)
               Contacts: John B. Waterbury (jwaterbury@whoi.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes: The following regions have an unresolved number
               of repeat copies: 2426365-2431895, 3531561-3532440,
               4808319-4799188, 5967783-5973981, 7275245-7279260.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
272619	272692	-	74	113473942	Tery_R0001	-	^{13 Val tRNA}
280981	281054	+	74	113473942	Tery_R0002	-	^{06 Asp tRNA}
367817	367889	-	73	113473942	Tery_R0003	-	^{16 Met tRNA}
412296	412368	-	73	113473942	Tery_R0004	-	^{20 Trp tRNA}
572149	572221	-	73	113473942	Tery_R0005	-	^{04 Glu tRNA}
869671	869743	-	73	113473942	Tery_R0006	-	^{17 Phe tRNA}
1212925	1213011	-	87	113473942	Tery_R0007	-	^{08 Ser tRNA}
1900405	1900476	-	72	113473942	Tery_R0008	-	^{07 Asn tRNA}
2171224	2171295	+	72	113473942	Tery_R0009	-	^{01 Gly tRNA}
2447382	2447483	+	102	113473942	Tery_R0010	-	SRP RNA; RNA component of signal recognition particle
2502921	2502994	+	74	113473942	Tery_R0011	-	^{03 Pro tRNA}
2690413	2690485	+	73	113473942	Tery_R0012	-	^{02 Ala tRNA}
2955814	2955895	+	82	113473942	Tery_R0013	-	^{15 Leu tRNA}
3137164	3138645	+	1482	113473942	Tery_R0014	-	16S ribosomal RNA
3138776	3138852	+	77	113473942	Tery_R0015	-	^{14 Ile tRNA}
3138864	3138936	+	73	113473942	Tery_R0016	-	^{02 Ala tRNA}
3139115	3141995	+	2881	113473942	Tery_R0017	-	23S ribosomal RNA
3279184	3279256	+	73	113473942	Tery_R0018	-	^{16 Met tRNA}
3280098	3280170	+	73	113473942	Tery_R0019	-	^{16 Met tRNA}
3343975	3344047	-	73	113473942	Tery_R0020	-	^{12 Thr tRNA}
3463816	3464174	-	359	113473942	Tery_R0021	-	RNA component of RNaseP
3785863	3785935	+	73	113473942	Tery_R0022	-	^{11 Arg tRNA}
3792558	3792654	-	97	113473942	Tery_R0023	-
4198353	4198442	+	90	113473942	Tery_R0024	-	^{08 Ser tRNA}
4204343	4204415	-	73	113473942	Tery_R0025	-	^{11 Arg tRNA}
4598528	4601408	-	2881	113473942	Tery_R0026	-	23S ribosomal RNA
4601587	4601659	-	73	113473942	Tery_R0027	-	^{02 Ala tRNA}
4601671	4601747	-	77	113473942	Tery_R0028	-	^{14 Ile tRNA}
4601878	4603359	-	1482	113473942	Tery_R0029	-	16S ribosomal RNA
4812963	4813033	-	71	113473942	Tery_R0030	-	^{01 Gly tRNA}
4846872	4846955	-	84	113473942	Tery_R0031	-	^{15 Leu tRNA}
5151622	5151693	-	72	113473942	Tery_R0032	-	^{05 Gln tRNA}
5267766	5267839	+	74	113473942	Tery_R0033	-	^{03 Pro tRNA}
5424986	5425170	-	185	113473942	Tery_R0034	-
5573494	5573567	+	74	113473942	Tery_R0035	-	^{11 Arg tRNA}
5630800	5630872	-	73	113473942	Tery_R0036	-	^{09 His tRNA}
5694355	5694435	-	81	113473942	Tery_R0037	-	^{15 Leu tRNA}
5741481	5741562	+	82	113473942	Tery_R0038	-	^{18 Tyr tRNA}
5741588	5741659	+	72	113473942	Tery_R0039	-	^{12 Thr tRNA}
5852521	5852592	-	72	113473942	Tery_R0040	-	^{13 Val tRNA}
5974625	5974709	-	85	113473942	Tery_R0041	-	^{08 Ser tRNA}
6170197	6170278	-	82	113473942	Tery_R0042	-	^{15 Leu tRNA}
6323345	6323416	-	72	113473942	Tery_R0043	-	^{10 Lys tRNA}
6399951	6400035	+	85	113473942	Tery_R0044	-	^{08 Ser tRNA}
6426812	6426883	+	72	113473942	Tery_R0045	-	^{19 Cys tRNA}
6712130	6712246	-	117	113473942	Tery_R0046	-	5S ribosomal RNA
6935042	6935125	+	84	113473942	Tery_R0047	-	^{15 Leu tRNA}
7574767	7575161	+	395	113473942	Tery_R0048	-	tmRNA