Материалы:NC 008322

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008322            4792610 bp    DNA     circular BCT 05-SEP-2006
   DEFINITION  Shewanella sp. MR-7, complete genome.
   ACCESSION   NC_008322
   VERSION     NC_008322.1  GI:114045513
   KEYWORDS    .
   SOURCE      Shewanella sp. MR-7
     ORGANISM  Shewanella sp. MR-7
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4792610)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Shewanella sp. MR-7
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4792610)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4792610)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000444.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000370
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
41406	42940	+	1535	114045513	Shewmr7_R0001	-	16S ribosomal RNA
43248	46140	+	2893	114045513	Shewmr7_R0002	-	23S ribosomal RNA
46362	46477	+	116	114045513	Shewmr7_R0003	-	5S ribosomal RNA
46514	46590	+	77	114045513	Shewmr7_R0004	-	^{06 Asp tRNA}
119309	119399	-	91	114045513	Shewmr7_R0005	-	Sec tRNA
147970	148204	-	235	114045513	Shewmr7_R0006	-
197497	199031	+	1535	114045513	Shewmr7_R0007	-	16S ribosomal RNA
199103	199179	+	77	114045513	Shewmr7_R0008	-	^{14 Ile tRNA}
199317	199392	+	76	114045513	Shewmr7_R0009	-	^{02 Ala tRNA}
199667	202559	+	2893	114045513	Shewmr7_R0010	-	23S ribosomal RNA
202781	202896	+	116	114045513	Shewmr7_R0011	-	5S ribosomal RNA
206260	206335	+	76	114045513	Shewmr7_R0012	-	^{12 Thr tRNA}
206343	206427	+	85	114045513	Shewmr7_R0013	-	^{18 Tyr tRNA}
206463	206536	+	74	114045513	Shewmr7_R0014	-	^{01 Gly tRNA}
206546	206621	+	76	114045513	Shewmr7_R0015	-	^{12 Thr tRNA}
249066	250600	+	1535	114045513	Shewmr7_R0016	-	16S ribosomal RNA
250913	253805	+	2893	114045513	Shewmr7_R0017	-	23S ribosomal RNA
254027	254142	+	116	114045513	Shewmr7_R0018	-	5S ribosomal RNA
286671	286970	+	300	114045513	Shewmr7_R0019	-	RNA component of RNaseP
441391	442925	+	1535	114045513	Shewmr7_R0020	-	16S ribosomal RNA
442997	443073	+	77	114045513	Shewmr7_R0021	-	^{14 Ile tRNA}
443211	443286	+	76	114045513	Shewmr7_R0022	-	^{02 Ala tRNA}
443561	446453	+	2893	114045513	Shewmr7_R0023	-	23S ribosomal RNA
446675	446790	+	116	114045513	Shewmr7_R0024	-	5S ribosomal RNA
446824	446899	+	76	114045513	Shewmr7_R0025	-	^{12 Thr tRNA}
448118	449652	+	1535	114045513	Shewmr7_R0026	-	16S ribosomal RNA
449960	452852	+	2893	114045513	Shewmr7_R0027	-	23S ribosomal RNA
453074	453189	+	116	114045513	Shewmr7_R0028	-	5S ribosomal RNA
760584	760818	+	235	114045513	Shewmr7_R0029	-
876962	877048	+	87	114045513	Shewmr7_R0030	-	^{15 Leu tRNA}
1084129	1084261	-	133	114045513	Shewmr7_R0031	-
1174523	1174599	+	77	114045513	Shewmr7_R0032	-	^{20 Trp tRNA}
1238945	1239021	+	77	114045513	Shewmr7_R0033	-	^{16 Met tRNA}
1239076	1239160	+	85	114045513	Shewmr7_R0034	-	^{15 Leu tRNA}
1239208	1239282	+	75	114045513	Shewmr7_R0035	-	^{05 Gln tRNA}
1239305	1239379	+	75	114045513	Shewmr7_R0036	-	^{05 Gln tRNA}
1239381	1239457	+	77	114045513	Shewmr7_R0037	-	^{16 Met tRNA}
1239541	1239625	+	85	114045513	Shewmr7_R0038	-	^{15 Leu tRNA}
1239646	1239720	+	75	114045513	Shewmr7_R0039	-	^{05 Gln tRNA}
1254540	1254626	+	87	114045513	Shewmr7_R0040	-	^{15 Leu tRNA}
1254710	1254786	+	77	114045513	Shewmr7_R0041	-	^{16 Met tRNA}
1261148	1261260	+	113	114045513	Shewmr7_R0042	-
1403855	1403946	+	92	114045513	Shewmr7_R0043	-	^{08 Ser tRNA}
1403967	1404043	+	77	114045513	Shewmr7_R0044	-	^{11 Arg tRNA}
1404074	1404150	+	77	114045513	Shewmr7_R0045	-	^{11 Arg tRNA}
1404233	1404309	+	77	114045513	Shewmr7_R0046	-	^{11 Arg tRNA}
1404353	1404429	+	77	114045513	Shewmr7_R0047	-	^{11 Arg tRNA}
1404474	1404550	+	77	114045513	Shewmr7_R0048	-	^{11 Arg tRNA}
1404587	1404678	+	92	114045513	Shewmr7_R0049	-	^{08 Ser tRNA}
1404772	1404848	+	77	114045513	Shewmr7_R0050	-	^{11 Arg tRNA}
1457139	1457214	-	76	114045513	Shewmr7_R0051	-	^{12 Thr tRNA}
1457221	1457296	-	76	114045513	Shewmr7_R0052	-	^{17 Phe tRNA}
1457754	1457829	-	76	114045513	Shewmr7_R0053	-	^{12 Thr tRNA}
1457836	1457911	-	76	114045513	Shewmr7_R0054	-	^{17 Phe tRNA}
1536623	1536698	-	76	114045513	Shewmr7_R0055	-	^{11 Arg tRNA}
1659246	1659321	-	76	114045513	Shewmr7_R0056	-	^{13 Val tRNA}
1659347	1659422	-	76	114045513	Shewmr7_R0057	-	^{13 Val tRNA}
1659448	1659523	-	76	114045513	Shewmr7_R0058	-	^{13 Val tRNA}
1659565	1659640	-	76	114045513	Shewmr7_R0059	-	^{13 Val tRNA}
1659673	1659748	-	76	114045513	Shewmr7_R0060	-	^{13 Val tRNA}
1659797	1659872	-	76	114045513	Shewmr7_R0061	-	^{13 Val tRNA}
1661982	1662057	+	76	114045513	Shewmr7_R0062	-	^{02 Ala tRNA}
1662125	1662200	+	76	114045513	Shewmr7_R0063	-	^{04 Glu tRNA}
1662307	1662382	+	76	114045513	Shewmr7_R0064	-	^{02 Ala tRNA}
1662447	1662522	+	76	114045513	Shewmr7_R0065	-	^{04 Glu tRNA}
1662703	1662778	+	76	114045513	Shewmr7_R0066	-	^{04 Glu tRNA}
1662878	1662953	+	76	114045513	Shewmr7_R0067	-	^{04 Glu tRNA}
1663053	1663128	+	76	114045513	Shewmr7_R0068	-	^{04 Glu tRNA}
1663309	1663384	+	76	114045513	Shewmr7_R0069	-	^{04 Glu tRNA}
1663463	1663538	+	76	114045513	Shewmr7_R0070	-	^{04 Glu tRNA}
1862220	1863754	+	1535	114045513	Shewmr7_R0071	-	16S ribosomal RNA
1863967	1864043	+	77	114045513	Shewmr7_R0072	-	^{14 Ile tRNA}
1864181	1864256	+	76	114045513	Shewmr7_R0073	-	^{02 Ala tRNA}
1864531	1867423	+	2893	114045513	Shewmr7_R0074	-	23S ribosomal RNA
1867642	1867757	+	116	114045513	Shewmr7_R0075	-	5S ribosomal RNA
1887423	1887499	-	77	114045513	Shewmr7_R0076	-	^{16 Met tRNA}
1887547	1887623	-	77	114045513	Shewmr7_R0077	-	^{16 Met tRNA}
1887713	1887789	-	77	114045513	Shewmr7_R0078	-	^{16 Met tRNA}
1887828	1887904	-	77	114045513	Shewmr7_R0079	-	^{16 Met tRNA}
1897331	1897421	+	91	114045513	Shewmr7_R0080	-	^{08 Ser tRNA}
1898054	1898144	+	91	114045513	Shewmr7_R0081	-	^{08 Ser tRNA}
1902088	1902163	+	76	114045513	Shewmr7_R0082	-	^{01 Gly tRNA}
1902185	1902258	+	74	114045513	Shewmr7_R0083	-	^{19 Cys tRNA}
1902307	1902393	+	87	114045513	Shewmr7_R0084	-	^{15 Leu tRNA}
1902524	1902610	+	87	114045513	Shewmr7_R0085	-	^{15 Leu tRNA}
2080710	2080797	+	88	114045513	Shewmr7_R0086	-	^{08 Ser tRNA}
2120823	2120883	-	61	114045513	Shewmr7_R0087	-
2259019	2259094	-	76	114045513	Shewmr7_R0088	-	^{07 Asn tRNA}
2259142	2259217	-	76	114045513	Shewmr7_R0089	-	^{07 Asn tRNA}
2259264	2259339	-	76	114045513	Shewmr7_R0090	-	^{07 Asn tRNA}
2259370	2259445	-	76	114045513	Shewmr7_R0091	-	^{07 Asn tRNA}
2259492	2259567	-	76	114045513	Shewmr7_R0092	-	^{07 Asn tRNA}
2265590	2265674	-	85	114045513	Shewmr7_R0093	-	^{18 Tyr tRNA}
2265805	2265889	-	85	114045513	Shewmr7_R0094	-	^{18 Tyr tRNA}
2265929	2266013	-	85	114045513	Shewmr7_R0095	-	^{18 Tyr tRNA}
2308526	2308601	+	76	114045513	Shewmr7_R0096	-	^{01 Gly tRNA}
2308625	2308698	+	74	114045513	Shewmr7_R0097	-	^{19 Cys tRNA}
2308748	2308834	+	87	114045513	Shewmr7_R0098	-	^{15 Leu tRNA}
2365553	2365643	-	91	114045513	Shewmr7_R0099	-	^{08 Ser tRNA}
2387285	2387361	+	77	114045513	Shewmr7_R0100	-	^{13 Val tRNA}
2387400	2387476	+	77	114045513	Shewmr7_R0101	-	^{13 Val tRNA}
2477491	2477589	-	99	114045513	Shewmr7_R0102	-
2652076	2652152	-	77	114045513	Shewmr7_R0103	-	^{06 Asp tRNA}
2652210	2652286	-	77	114045513	Shewmr7_R0104	-	^{06 Asp tRNA}
2749046	2749122	-	77	114045513	Shewmr7_R0105	-	^{03 Pro tRNA}
2822434	2822544	-	111	114045513	Shewmr7_R0106	-
2887897	2887972	-	76	114045513	Shewmr7_R0107	-	^{10 Lys tRNA}
2888134	2888209	-	76	114045513	Shewmr7_R0108	-	^{10 Lys tRNA}
2888246	2888321	-	76	114045513	Shewmr7_R0109	-	^{10 Lys tRNA}
2888358	2888433	-	76	114045513	Shewmr7_R0110	-	^{10 Lys tRNA}
2888471	2888546	-	76	114045513	Shewmr7_R0111	-	^{10 Lys tRNA}
2888707	2888782	-	76	114045513	Shewmr7_R0112	-	^{10 Lys tRNA}
2888837	2888912	-	76	114045513	Shewmr7_R0113	-	^{10 Lys tRNA}
3004611	3004727	-	117	114045513	Shewmr7_R0114	-	SRP RNA; RNA component of signal recognition particle
3028285	3028360	-	76	114045513	Shewmr7_R0115	-	^{09 His tRNA}
3028370	3028446	-	77	114045513	Shewmr7_R0116	-	^{11 Arg tRNA}
3028562	3028638	-	77	114045513	Shewmr7_R0117	-	^{03 Pro tRNA}
3203680	3203831	-	152	114045513	Shewmr7_R0118	-
3388384	3388738	+	355	114045513	Shewmr7_R0119	-	tmRNA
3542454	3542530	+	77	114045513	Shewmr7_R0120	-	^{16 Met tRNA}
3641000	3641115	-	116	114045513	Shewmr7_R0121	-	5S ribosomal RNA
3641247	3644139	-	2893	114045513	Shewmr7_R0122	-	23S ribosomal RNA
3644452	3645986	-	1535	114045513	Shewmr7_R0123	-	16S ribosomal RNA
3653802	3653877	+	76	114045513	Shewmr7_R0124	-	^{17 Phe tRNA}
3653933	3654019	+	87	114045513	Shewmr7_R0125	-	^{15 Leu tRNA}
3654063	3654149	+	87	114045513	Shewmr7_R0126	-	^{15 Leu tRNA}
3758196	3758363	-	168	114045513	Shewmr7_R0127	-
3918193	3918312	-	120	114045513	Shewmr7_R0128	-
3918313	3918431	-	119	114045513	Shewmr7_R0129	-
4075576	4075651	-	76	114045513	Shewmr7_R0130	-	^{01 Gly tRNA}
4075775	4075850	-	76	114045513	Shewmr7_R0131	-	^{01 Gly tRNA}
4075883	4075958	-	76	114045513	Shewmr7_R0132	-	^{01 Gly tRNA}
4075991	4076066	-	76	114045513	Shewmr7_R0133	-	^{01 Gly tRNA}
4344908	4344984	-	77	114045513	Shewmr7_R0134	-	^{03 Pro tRNA}
4345038	4345114	-	77	114045513	Shewmr7_R0135	-	^{03 Pro tRNA}
4345216	4345291	-	76	114045513	Shewmr7_R0136	-	^{09 His tRNA}
4345345	4345421	-	77	114045513	Shewmr7_R0137	-	^{11 Arg tRNA}
4491693	4491769	-	77	114045513	Shewmr7_R0138	-	^{06 Asp tRNA}
4491806	4491921	-	116	114045513	Shewmr7_R0139	-	5S ribosomal RNA
4492143	4495035	-	2893	114045513	Shewmr7_R0140	-	23S ribosomal RNA
4495343	4496877	-	1535	114045513	Shewmr7_R0141	-	16S ribosomal RNA
4758424	4758539	-	116	114045513	Shewmr7_R0142	-	5S ribosomal RNA
4758761	4761654	-	2894	114045513	Shewmr7_R0143	-	23S ribosomal RNA
4761962	4763496	-	1535	114045513	Shewmr7_R0144	-	16S ribosomal RNA