Геном прокариот/Материалы:NC 008344

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   LOCUS       NC_008344            2661057 bp    DNA     circular BCT 21-MAY-2007
   DEFINITION  Nitrosomonas eutropha C91, complete genome.
   ACCESSION   NC_008344
   VERSION     NC_008344.1  GI:114330036
   KEYWORDS    .
   SOURCE      Nitrosomonas eutropha C91
     ORGANISM  Nitrosomonas eutropha C91
               Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
               Nitrosomonadaceae; Nitrosomonas.
   REFERENCE   1  (bases 1 to 2661057)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Arp,D., Klotz,M.,
               Norton,J., Stein,L., Sayavedra-Soto,L., Hommes,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of the choromosome of Nitrosomonas eutropha C91
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2661057)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (14-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2661057)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Arp,D., Klotz,M.,
               Norton,J., Stein,L., Sayavedra-Soto,L., Hommes,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000450.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634486
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Contacts: Dan Arp (arpd@bcc.orst.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
6613 6688 + 76 114330036 Neut_R0001 - 01 Gly tRNA
123441 123514 + 74 114330036 Neut_R0002 - 19 Cys tRNA
123540 123628 + 89 114330036 Neut_R0003 - 15 Leu tRNA
210148 210233 - 86 114330036 Neut_R0004 - 15 Leu tRNA
231716 233245 + 1530 114330036 Neut_R0005 - 16S ribosomal RNA
233340 233416 + 77 114330036 Neut_R0006 - 14 Ile tRNA
233419 233494 + 76 114330036 Neut_R0007 - 02 Ala tRNA
233643 236526 + 2884 114330036 Neut_R0008 - 23S ribosomal RNA
236593 236705 + 113 114330036 Neut_R0009 - 5S ribosomal RNA
309741 309817 + 77 114330036 Neut_R0010 - 16 Met tRNA
330649 330719 + 71 114330036 Neut_R0011 - 01 Gly tRNA
391066 391141 - 76 114330036 Neut_R0012 - 04 Glu tRNA
391167 391242 - 76 114330036 Neut_R0013 - 02 Ala tRNA
594166 594241 + 76 114330036 Neut_R0014 - 12 Thr tRNA
597363 597467 - 105 114330036 Neut_R0015 - SRP RNA; RNA component of signal recognition particle
625149 625225 + 77 114330036 Neut_R0016 - 13 Val tRNA
669807 669882 + 76 114330036 Neut_R0017 - 13 Val tRNA
669942 670018 + 77 114330036 Neut_R0018 - 06 Asp tRNA
841072 841148 - 77 114330036 Neut_R0019 - 03 Pro tRNA
948549 948633 + 85 114330036 Neut_R0020 - 15 Leu tRNA
972317 972392 - 76 114330036 Neut_R0021 - 10 Lys tRNA
1155347 1155422 + 76 114330036 Neut_R0022 - 12 Thr tRNA
1165765 1165855 - 91 114330036 Neut_R0023 - 08 Ser tRNA
1179145 1179219 + 75 114330036 Neut_R0024 - 05 Gln tRNA
1286397 1286472 - 76 114330036 Neut_R0025 - 11 Arg tRNA
1329101 1329176 - 76 114330036 Neut_R0026 - 09 His tRNA
1329228 1329304 - 77 114330036 Neut_R0027 - 11 Arg tRNA
1329349 1329425 - 77 114330036 Neut_R0028 - 03 Pro tRNA
1531916 1531992 + 77 114330036 Neut_R0029 - 16 Met tRNA
1569828 1569903 - 76 114330036 Neut_R0030 - 07 Asn tRNA
1654953 1655040 - 88 114330036 Neut_R0031 - 08 Ser tRNA
1680127 1680213 - 87 114330036 Neut_R0032 - 15 Leu tRNA
1702900 1702984 + 85 114330036 Neut_R0033 - 15 Leu tRNA
1716702 1716777 + 76 114330036 Neut_R0034 - 16 Met tRNA
1770642 1770717 - 76 114330036 Neut_R0035 - 11 Arg tRNA
1856062 1856154 + 93 114330036 Neut_R0036 - 08 Ser tRNA
1862463 1862537 + 75 114330036 Neut_R0037 - 13 Val tRNA
1911730 1911805 - 76 114330036 Neut_R0038 - 20 Trp tRNA
1913105 1913179 - 75 114330036 Neut_R0039 - 12 Thr tRNA
1913215 1913288 - 74 114330036 Neut_R0040 - 01 Gly tRNA
1913401 1913485 - 85 114330036 Neut_R0041 - 18 Tyr tRNA
2193671 2193747 + 77 114330036 Neut_R0042 - 11 Arg tRNA
2193816 2193891 + 76 114330036 Neut_R0043 - 17 Phe tRNA
2205667 2205759 - 93 114330036 Neut_R0044 - 08 Ser tRNA
2450231 2450307 - 77 114330036 Neut_R0045 - 03 Pro tRNA
2634560 2634920 - 361 114330036 Neut_R0046 - tmRNA
2649398 2649634 + 237 114330036 Neut_R0047 - RNA component of RNaseP