Материалы:NC 008345

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008345            4845257 bp    DNA     circular BCT 15-SEP-2006
   DEFINITION  Shewanella frigidimarina NCIMB 400, complete genome.
   ACCESSION   NC_008345
   VERSION     NC_008345.1  GI:114561188
   KEYWORDS    .
   SOURCE      Shewanella frigidimarina NCIMB 400
     ORGANISM  Shewanella frigidimarina NCIMB 400
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4845257)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T.,
               Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F.,
               Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C.,
               Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella frigidimarina NCIMB 400
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4845257)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4845257)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T.,
               Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F.,
               Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C.,
               Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000447.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634606
               Source DNA and bacteria available from James K. Fredrickson
               (Jim.fredrickson@pnl.gov)
               Bacteria also available from NCIMB:NCIMB 400
               Contacts: James K. Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42023	43557	+	1535	114561188	Sfri_R0001	-	16S ribosomal RNA
43945	46860	+	2916	114561188	Sfri_R0002	-	23S ribosomal RNA
47003	47124	+	122	114561188	Sfri_R0003	-	5S ribosomal RNA
141671	143205	+	1535	114561188	Sfri_R0004	-	16S ribosomal RNA
143295	143371	+	77	114561188	Sfri_R0005	-	^{14 Ile tRNA}
143517	143592	+	76	114561188	Sfri_R0006	-	^{02 Ala tRNA}
143928	146843	+	2916	114561188	Sfri_R0007	-	23S ribosomal RNA
146986	147107	+	122	114561188	Sfri_R0008	-	5S ribosomal RNA
151770	151845	+	76	114561188	Sfri_R0009	-	^{12 Thr tRNA}
151853	151937	+	85	114561188	Sfri_R0010	-	^{18 Tyr tRNA}
151973	152046	+	74	114561188	Sfri_R0011	-	^{01 Gly tRNA}
152056	152131	+	76	114561188	Sfri_R0012	-	^{14 Ile tRNA}
194560	196094	+	1535	114561188	Sfri_R0013	-	16S ribosomal RNA
196482	199397	+	2916	114561188	Sfri_R0014	-	23S ribosomal RNA
199536	199657	+	122	114561188	Sfri_R0015	-	5S ribosomal RNA
199760	199836	+	77	114561188	Sfri_R0016	-	^{06 Asp tRNA}
420382	420681	+	300	114561188	Sfri_R0017	-	RNA component of RNaseP
473790	473866	+	77	114561188	Sfri_R0018	-	^{11 Arg tRNA}
473918	473993	+	76	114561188	Sfri_R0019	-	^{09 His tRNA}
474015	474091	+	77	114561188	Sfri_R0020	-	^{03 Pro tRNA}
474157	474233	+	77	114561188	Sfri_R0021	-	^{03 Pro tRNA}
474297	474373	+	77	114561188	Sfri_R0022	-	^{03 Pro tRNA}
575178	575262	+	85	114561188	Sfri_R0023	-	^{15 Leu tRNA}
668906	669050	+	145	114561188	Sfri_R0024	-
777366	777452	-	87	114561188	Sfri_R0025	-	^{15 Leu tRNA}
777512	777587	-	76	114561188	Sfri_R0026	-	^{17 Phe tRNA}
785406	786940	+	1535	114561188	Sfri_R0027	-	16S ribosomal RNA
787328	790242	+	2915	114561188	Sfri_R0028	-	23S ribosomal RNA
790385	790506	+	122	114561188	Sfri_R0029	-	5S ribosomal RNA
793280	794814	+	1535	114561188	Sfri_R0030	-	16S ribosomal RNA
795202	798117	+	2916	114561188	Sfri_R0031	-	23S ribosomal RNA
798260	798381	+	122	114561188	Sfri_R0032	-	5S ribosomal RNA
800254	800330	+	77	114561188	Sfri_R0033	-	^{20 Trp tRNA}
843284	843360	+	77	114561188	Sfri_R0034	-	^{16 Met tRNA}
843406	843490	+	85	114561188	Sfri_R0035	-	^{15 Leu tRNA}
843536	843610	+	75	114561188	Sfri_R0036	-	^{05 Gln tRNA}
843634	843708	+	75	114561188	Sfri_R0037	-	^{05 Gln tRNA}
843714	843790	+	77	114561188	Sfri_R0038	-	^{16 Met tRNA}
843884	843968	+	85	114561188	Sfri_R0039	-	^{15 Leu tRNA}
844017	844091	+	75	114561188	Sfri_R0040	-	^{05 Gln tRNA}
1153446	1153532	+	87	114561188	Sfri_R0041	-	^{15 Leu tRNA}
1153614	1153689	+	76	114561188	Sfri_R0042	-	^{16 Met tRNA}
1160053	1160165	+	113	114561188	Sfri_R0043	-
1257132	1257223	+	92	114561188	Sfri_R0044	-	^{08 Ser tRNA}
1257246	1257322	+	77	114561188	Sfri_R0045	-	^{11 Arg tRNA}
1257350	1257426	+	77	114561188	Sfri_R0046	-	^{11 Arg tRNA}
1257455	1257531	+	77	114561188	Sfri_R0047	-	^{11 Arg tRNA}
1257540	1257631	+	92	114561188	Sfri_R0048	-	^{08 Ser tRNA}
1257705	1257781	+	77	114561188	Sfri_R0049	-	^{11 Arg tRNA}
1293003	1293358	-	356	114561188	Sfri_R0050	-	tmRNA
1363511	1363586	+	76	114561188	Sfri_R0051	-	^{11 Arg tRNA}
1504073	1504225	+	153	114561188	Sfri_R0052	-
1715302	1715387	+	86	114561188	Sfri_R0053	-	^{15 Leu tRNA}
1749039	1749114	+	76	114561188	Sfri_R0054	-	^{10 Lys tRNA}
1749240	1749315	+	76	114561188	Sfri_R0055	-	^{10 Lys tRNA}
1749441	1749516	+	76	114561188	Sfri_R0056	-	^{10 Lys tRNA}
1749642	1749717	+	76	114561188	Sfri_R0057	-	^{10 Lys tRNA}
1749843	1749918	+	76	114561188	Sfri_R0058	-	^{10 Lys tRNA}
1750044	1750119	+	76	114561188	Sfri_R0059	-	^{10 Lys tRNA}
1818512	1818619	+	108	114561188	Sfri_R0060	-
1849550	1851084	+	1535	114561188	Sfri_R0061	-	16S ribosomal RNA
1851303	1851379	+	77	114561188	Sfri_R0062	-	^{14 Ile tRNA}
1851529	1851604	+	76	114561188	Sfri_R0063	-	^{02 Ala tRNA}
1851941	1854856	+	2916	114561188	Sfri_R0064	-	23S ribosomal RNA
1855054	1855175	+	122	114561188	Sfri_R0065	-	5S ribosomal RNA
2127062	2127151	+	90	114561188	Sfri_R0066	-	^{08 Ser tRNA}
2222173	2222257	-	85	114561188	Sfri_R0067	-	^{18 Tyr tRNA}
2222288	2222372	-	85	114561188	Sfri_R0068	-	^{18 Tyr tRNA}
2222460	2222544	-	85	114561188	Sfri_R0069	-	^{18 Tyr tRNA}
2306048	2306123	+	76	114561188	Sfri_R0070	-	^{01 Gly tRNA}
2306166	2306239	+	74	114561188	Sfri_R0071	-	^{19 Cys tRNA}
2306289	2306374	+	86	114561188	Sfri_R0072	-	^{15 Leu tRNA}
2404762	2404838	+	77	114561188	Sfri_R0073	-	^{13 Val tRNA}
2404887	2404963	+	77	114561188	Sfri_R0074	-	^{13 Val tRNA}
2563286	2563375	-	90	114561188	Sfri_R0075	-	^{08 Ser tRNA}
2596094	2596169	+	76	114561188	Sfri_R0076	-	^{07 Asn tRNA}
2596203	2596278	+	76	114561188	Sfri_R0077	-	^{07 Asn tRNA}
2596302	2596377	+	76	114561188	Sfri_R0078	-	^{07 Asn tRNA}
2596407	2596482	+	76	114561188	Sfri_R0079	-	^{07 Asn tRNA}
2596516	2596591	+	76	114561188	Sfri_R0080	-	^{07 Asn tRNA}
2632886	2632985	-	100	114561188	Sfri_R0081	-
2636128	2636204	-	77	114561188	Sfri_R0082	-	^{06 Asp tRNA}
2636285	2636361	-	77	114561188	Sfri_R0083	-	^{06 Asp tRNA}
2981097	2981173	+	77	114561188	Sfri_R0084	-	^{03 Pro tRNA}
3107614	3107689	-	76	114561188	Sfri_R0085	-	^{09 His tRNA}
3107698	3107774	-	77	114561188	Sfri_R0086	-	^{11 Arg tRNA}
3107860	3107936	-	77	114561188	Sfri_R0087	-	^{03 Pro tRNA}
3154683	3154797	-	115	114561188	Sfri_R0088	-	SRP RNA; RNA component of signal recognition particle
3174166	3174251	-	86	114561188	Sfri_R0089	-	^{15 Leu tRNA}
3174301	3174374	-	74	114561188	Sfri_R0090	-	^{19 Cys tRNA}
3174416	3174491	-	76	114561188	Sfri_R0091	-	^{01 Gly tRNA}
3187709	3187798	-	90	114561188	Sfri_R0092	-	^{08 Ser tRNA}
3197419	3197494	+	76	114561188	Sfri_R0093	-	^{16 Met tRNA}
3197540	3197615	+	76	114561188	Sfri_R0094	-	^{16 Met tRNA}
3197661	3197736	+	76	114561188	Sfri_R0095	-	^{16 Met tRNA}
3197783	3197858	+	76	114561188	Sfri_R0096	-	^{16 Met tRNA}
3198189	3198264	+	76	114561188	Sfri_R0097	-	^{16 Met tRNA}
3261000	3261075	-	76	114561188	Sfri_R0098	-	^{13 Val tRNA}
3261110	3261185	-	76	114561188	Sfri_R0099	-	^{13 Val tRNA}
3261213	3261288	-	76	114561188	Sfri_R0100	-	^{13 Val tRNA}
3261330	3261405	-	76	114561188	Sfri_R0101	-	^{13 Val tRNA}
3261438	3261513	-	76	114561188	Sfri_R0102	-	^{13 Val tRNA}
3261553	3261628	-	76	114561188	Sfri_R0103	-	^{13 Val tRNA}
3263399	3263474	+	76	114561188	Sfri_R0104	-	^{02 Ala tRNA}
3263753	3263828	+	76	114561188	Sfri_R0105	-	^{04 Glu tRNA}
3263961	3264036	+	76	114561188	Sfri_R0106	-	^{04 Glu tRNA}
3264347	3264422	+	76	114561188	Sfri_R0107	-	^{04 Glu tRNA}
3264555	3264630	+	76	114561188	Sfri_R0108	-	^{04 Glu tRNA}
3264762	3264837	+	76	114561188	Sfri_R0109	-	^{04 Glu tRNA}
3264970	3265045	+	76	114561188	Sfri_R0110	-	^{04 Glu tRNA}
3265082	3265157	+	76	114561188	Sfri_R0111	-	^{02 Ala tRNA}
3459744	3459819	+	76	114561188	Sfri_R0112	-	^{17 Phe tRNA}
3459826	3459901	+	76	114561188	Sfri_R0113	-	^{12 Thr tRNA}
3597796	3597872	+	77	114561188	Sfri_R0114	-	^{16 Met tRNA}
3963093	3963168	-	76	114561188	Sfri_R0115	-	^{01 Gly tRNA}
3963272	3963347	-	76	114561188	Sfri_R0116	-	^{01 Gly tRNA}
3963441	3963516	-	76	114561188	Sfri_R0117	-	^{01 Gly tRNA}
4291949	4292038	+	90	114561188	Sfri_R0118	-	^{08 Ser tRNA}
4512241	4512362	-	122	114561188	Sfri_R0119	-	5S ribosomal RNA
4512505	4515420	-	2916	114561188	Sfri_R0120	-	23S ribosomal RNA
4515808	4517342	-	1535	114561188	Sfri_R0121	-	16S ribosomal RNA
4519940	4520061	-	122	114561188	Sfri_R0122	-	5S ribosomal RNA
4520094	4520169	-	76	114561188	Sfri_R0123	-	^{12 Thr tRNA}
4520196	4520317	-	122	114561188	Sfri_R0124	-	5S ribosomal RNA
4520460	4523375	-	2916	114561188	Sfri_R0125	-	23S ribosomal RNA
4523711	4523786	-	76	114561188	Sfri_R0126	-	^{02 Ala tRNA}
4523920	4523996	-	77	114561188	Sfri_R0127	-	^{14 Ile tRNA}
4524086	4525620	-	1535	114561188	Sfri_R0128	-	16S ribosomal RNA
4620263	4620432	+	170	114561188	Sfri_R0129	-
4799016	4799092	-	77	114561188	Sfri_R0130	-	^{06 Asp tRNA}
4799195	4799316	-	122	114561188	Sfri_R0131	-	5S ribosomal RNA
4799459	4802374	-	2916	114561188	Sfri_R0132	-	23S ribosomal RNA
4802761	4804295	-	1535	114561188	Sfri_R0133	-	16S ribosomal RNA