Геном прокариот/Материалы:NC 008435

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008435            5505494 bp    DNA     circular BCT 05-OCT-2006
   DEFINITION  Rhodopseudomonas palustris BisA53, complete genome.
   ACCESSION   NC_008435
   VERSION     NC_008435.1  GI:115522030
   KEYWORDS    .
   SOURCE      Rhodopseudomonas palustris BisA53
     ORGANISM  Rhodopseudomonas palustris BisA53
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 5505494)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
               Harwood,C.S., Oda,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rhodopseudomonas palustris BisA53
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5505494)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5505494)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
               Harwood,C.S., Oda,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-SEP-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000463.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000371
               Source DNA and bacteria available from Caroline S. Harwood
               (csh5@u.washington.edu)Contacts: Caroline S. Harwood
               (csh5@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
53344	53419	+	76	115522030	RPE_R0001	-	^{02 Ala tRNA}
70502	70577	-	76	115522030	RPE_R0002	-	^{12 Thr tRNA}
131900	131976	-	77	115522030	RPE_R0003	-	^{11 Arg tRNA}
452418	452492	+	75	115522030	RPE_R0005	-	^{01 Gly tRNA}
487400	487475	-	76	115522030	RPE_R0006	-	^{02 Ala tRNA}
553323	553409	+	87	115522030	RPE_R0007	-	^{15 Leu tRNA}
609133	609222	+	90	115522030	RPE_R0009	-	^{08 Ser tRNA}
712113	712189	-	77	115522030	RPE_R0010	-	^{11 Arg tRNA}
787043	787117	+	75	115522030	RPE_R0011	-	^{13 Val tRNA}
861574	863055	+	1482	115522030	RPE_R0012	-	16S ribosomal RNA
863295	863371	+	77	115522030	RPE_R0013	-	^{14 Ile tRNA}
863419	863494	+	76	115522030	RPE_R0014	-	^{02 Ala tRNA}
864126	866778	+	2653	115522030	RPE_R0015	-	23S ribosomal RNA
866937	867051	+	115	115522030	RPE_R0016	-	5S ribosomal RNA
879633	879717	-	85	115522030	RPE_R0017	-	^{15 Leu tRNA}
911929	912003	-	75	115522030	RPE_R0018	-	^{04 Glu tRNA}
1174349	1174425	-	77	115522030	RPE_R0019	-	^{16 Met tRNA}
1217418	1217492	+	75	115522030	RPE_R0020	-	^{05 Gln tRNA}
2309970	2310337	-	368	115522030	RPE_R0024	-	RNA component of RNaseP
2367543	2367869	-	327	115522030	RPE_R0025	-	tmRNA
2450931	2451006	+	76	115522030	RPE_R0026	-	^{10 Lys tRNA}
2550824	2550910	+	87	115522030	RPE_R0029	-	^{15 Leu tRNA}
2608855	2608929	+	75	115522030	RPE_R0030	-	^{12 Thr tRNA}
2771100	2771184	+	85	115522030	RPE_R0031	-	^{15 Leu tRNA}
2779292	2779368	+	77	115522030	RPE_R0032	-	^{13 Val tRNA}
2786010	2786086	+	77	115522030	RPE_R0033	-	^{06 Asp tRNA}
2999930	3000019	-	90	115522030	RPE_R0034	-	^{08 Ser tRNA}
3012925	3013018	+	94	115522030	RPE_R0035	-	^{08 Ser tRNA}
3052755	3052831	-	77	115522030	RPE_R0036	-	^{11 Arg tRNA}
3086508	3086581	+	74	115522030	RPE_R0037	-	^{19 Cys tRNA}
3088451	3088525	-	75	115522030	RPE_R0038	-	^{07 Asn tRNA}
3122684	3122759	-	76	115522030	RPE_R0039	-	^{10 Lys tRNA}
3181412	3181489	-	78	115522030	RPE_R0040	-	^{03 Pro tRNA}
3270585	3270661	-	77	115522030	RPE_R0041	-	^{03 Pro tRNA}
3274587	3274661	+	75	115522030	RPE_R0042	-	^{04 Glu tRNA}
3487645	3487850	-	206	115522030	RPE_R0043	-
3829967	3830051	-	85	115522030	RPE_R0047	-	^{15 Leu tRNA}
3841218	3841294	+	77	115522030	RPE_R0048	-	^{11 Arg tRNA}
4031186	4031261	-	76	115522030	RPE_R0049	-	^{20 Trp tRNA}
4093728	4093801	-	74	115522030	RPE_R0050	-	^{01 Gly tRNA}
4110473	4110558	-	86	115522030	RPE_R0051	-	^{18 Tyr tRNA}
4121694	4121767	+	74	115522030	RPE_R0052	-	^{05 Gln tRNA}
4378927	4379003	-	77	115522030	RPE_R0053	-	^{16 Met tRNA}
4548052	4548128	-	77	115522030	RPE_R0054	-	^{09 His tRNA}
4785431	4785506	-	76	115522030	RPE_R0055	-	^{16 Met tRNA}
4799089	4799163	+	75	115522030	RPE_R0056	-	^{13 Val tRNA}
4850428	4850542	-	115	115522030	RPE_R0059	-	5S ribosomal RNA
4850692	4853344	-	2653	115522030	RPE_R0060	-	23S ribosomal RNA
4853944	4854019	-	76	115522030	RPE_R0061	-	^{02 Ala tRNA}
4854067	4854143	-	77	115522030	RPE_R0062	-	^{14 Ile tRNA}
4854382	4855863	-	1482	115522030	RPE_R0063	-	16S ribosomal RNA
4911104	4911180	-	77	115522030	RPE_R0064	-	^{03 Pro tRNA}
5015656	5015731	-	76	115522030	RPE_R0065	-	^{17 Phe tRNA}
5031742	5031816	+	75	115522030	RPE_R0066	-	^{12 Thr tRNA}
5088333	5088422	+	90	115522030	RPE_R0067	-	^{08 Ser tRNA}
5202363	5202439	+	77	115522030	RPE_R0068	-	^{11 Arg tRNA}
5393342	5393446	-	105	115522030	RPE_R0069	-	SRP RNA; RNA component of signal recognition particle
5450554	5450627	-	74	115522030	RPE_R0070	-	^{01 Gly tRNA}