Геном прокариот/Материалы:NC 008525

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008525            1832387 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Pediococcus pentosaceus ATCC 25745, complete genome.
   ACCESSION   NC_008525
   VERSION     NC_008525.1  GI:116491818
   KEYWORDS    .
   SOURCE      Pediococcus pentosaceus ATCC 25745
     ORGANISM  Pediococcus pentosaceus ATCC 25745
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Pediococcus.
   REFERENCE   1  (bases 1 to 1832387)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1832387)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1832387)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000422.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662186
               Source DNA and bacteria available from Jeffery R. Broadbent
               (broadbnt@cc.usu.edu)
               Bacteria also available from ATCC: ATCC 25745
               Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu)
                         James L. Steele (jlsteele@facstaff.wisc.edu)
                         David Mills (damills@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
107547	107619	-	73	116491818	PEPE_t0098	-	^{02 Ala tRNA}
116896	118475	+	1580	116491818	PEPE_r0108	-	16S ribosomal RNA
118704	121626	+	2923	116491818	PEPE_r0109	-	23S ribosomal RNA
121720	121836	+	117	116491818	PEPE_r0110	-	5S ribosomal RNA
277878	279458	+	1581	116491818	PEPE_r0236	-	16S ribosomal RNA
279687	282609	+	2923	116491818	PEPE_r0237	-	23S ribosomal RNA
282703	282819	+	117	116491818	PEPE_r0238	-	5S ribosomal RNA
282936	283009	+	74	116491818	PEPE_t0239	-	^{12 Thr tRNA}
509466	509537	-	72	116491818	PEPE_t0456	-	^{11 Arg tRNA}
600255	600623	-	369	116491818	PEPE_s0541	-	tmRNA
649284	649357	-	74	116491818	PEPE_t0594	-	^{11 Arg tRNA}
671638	673217	+	1580	116491818	PEPE_r0615	-	16S ribosomal RNA
673294	673368	+	75	116491818	PEPE_t0616	-	^{14 Ile tRNA}
673374	673446	+	73	116491818	PEPE_t0617	-	^{02 Ala tRNA}
673635	676557	+	2923	116491818	PEPE_r0618	-	23S ribosomal RNA
676652	676768	+	117	116491818	PEPE_r0619	-	5S ribosomal RNA
676774	676846	+	73	116491818	PEPE_t0620	-	^{13 Val tRNA}
676856	676928	+	73	116491818	PEPE_t0621	-	^{10 Lys tRNA}
676988	677060	+	73	116491818	PEPE_t0622	-	^{12 Thr tRNA}
677071	677142	+	72	116491818	PEPE_t0623	-	^{01 Gly tRNA}
677175	677260	+	86	116491818	PEPE_t0624	-	^{15 Leu tRNA}
677269	677342	+	74	116491818	PEPE_t0625	-	^{11 Arg tRNA}
677352	677425	+	74	116491818	PEPE_t0626	-	^{03 Pro tRNA}
677465	677538	+	74	116491818	PEPE_t0627	-	^{16 Met tRNA}
677559	677632	+	74	116491818	PEPE_t0628	-	^{16 Met tRNA}
677679	677768	+	90	116491818	PEPE_t0629	-	^{08 Ser tRNA}
677778	677851	+	74	116491818	PEPE_t0630	-	^{16 Met tRNA}
677856	677929	+	74	116491818	PEPE_t0631	-	^{06 Asp tRNA}
677935	678007	+	73	116491818	PEPE_t0632	-	^{17 Phe tRNA}
678032	678102	+	71	116491818	PEPE_t0633	-	^{01 Gly tRNA}
678121	678195	+	75	116491818	PEPE_t0634	-	^{14 Ile tRNA}
678199	678286	+	88	116491818	PEPE_t0635	-	^{08 Ser tRNA}
678310	678384	+	75	116491818	PEPE_t0636	-	^{04 Glu tRNA}
678415	678488	+	74	116491818	PEPE_t0637	-	^{16 Met tRNA}
678493	678566	+	74	116491818	PEPE_t0638	-	^{06 Asp tRNA}
695336	695419	+	84	116491818	PEPE_t0656	-	^{15 Leu tRNA}
705141	705214	+	74	116491818	PEPE_t0665	-	^{01 Gly tRNA}
818739	818812	-	74	116491818	PEPE_t0808	-	^{11 Arg tRNA}
936650	936983	+	334	116491818	PEPE_r0935	-	RNA_RNaseP_classB
1127365	1127452	+	88	116491818	PEPE_t1128	-	^{08 Ser tRNA}
1209541	1209611	-	71	116491818	PEPE_t1211	-	^{19 Cys tRNA}
1209696	1209779	-	84	116491818	PEPE_t1212	-	^{15 Leu tRNA}
1209827	1209899	-	73	116491818	PEPE_t1213	-	^{09 His tRNA}
1209905	1209978	-	74	116491818	PEPE_t1214	-	^{20 Trp tRNA}
1210023	1210095	-	73	116491818	PEPE_t1215	-	^{17 Phe tRNA}
1210118	1210191	-	74	116491818	PEPE_t1216	-	^{06 Asp tRNA}
1210210	1210282	-	73	116491818	PEPE_t1217	-	^{13 Val tRNA}
1210290	1210361	-	72	116491818	PEPE_t1218	-	^{04 Glu tRNA}
1210380	1210471	-	92	116491818	PEPE_t1219	-	^{08 Ser tRNA}
1210484	1210556	-	73	116491818	PEPE_t1220	-	^{07 Asn tRNA}
1210562	1210679	-	118	116491818	PEPE_r1221	-	5S ribosomal RNA
1210773	1213695	-	2923	116491818	PEPE_r1222	-	23S ribosomal RNA
1213924	1215503	-	1580	116491818	PEPE_r1223	-	16S ribosomal RNA
1330717	1330789	+	73	116491818	PEPE_t1341	-	^{04 Glu tRNA}
1330798	1330873	+	76	116491818	PEPE_t1342	-	^{05 Gln tRNA}
1409267	1409340	-	74	116491818	PEPE_t1429	-	^{03 Pro tRNA}
1409431	1409504	-	74	116491818	PEPE_t1430	-	^{11 Arg tRNA}
1409526	1409597	-	72	116491818	PEPE_t1431	-	^{01 Gly tRNA}
1409602	1409674	-	73	116491818	PEPE_t1432	-	^{12 Thr tRNA}
1409687	1409768	-	82	116491818	PEPE_t1433	-	^{15 Leu tRNA}
1409811	1409883	-	73	116491818	PEPE_t1434	-	^{13 Val tRNA}
1487116	1487204	-	89	116491818	PEPE_t1519	-	^{15 Leu tRNA}
1499426	1499497	-	72	116491818	PEPE_t1530	-	^{05 Gln tRNA}
1499501	1499586	-	86	116491818	PEPE_t1531	-	^{18 Tyr tRNA}
1502655	1502727	-	73	116491818	PEPE_t1535	-	^{12 Thr tRNA}
1502776	1502848	-	73	116491818	PEPE_t1536	-	^{07 Asn tRNA}
1502854	1502971	-	118	116491818	PEPE_r1537	-	5S ribosomal RNA
1503065	1505987	-	2923	116491818	PEPE_r1538	-	23S ribosomal RNA
1506176	1506248	-	73	116491818	PEPE_t1539	-	^{02 Ala tRNA}
1506254	1506328	-	75	116491818	PEPE_t1540	-	^{14 Ile tRNA}
1506405	1507984	-	1580	116491818	PEPE_r1541	-	16S ribosomal RNA
1777594	1777669	+	76	116491818	PEPE_t1798	-	^{10 Lys tRNA}