Геном прокариот/Материалы:NC 008527

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   LOCUS       NC_008527            2438589 bp    DNA     circular BCT 14-FEB-2007
   DEFINITION  Lactococcus lactis subsp. cremoris SK11, complete genome.
   ACCESSION   NC_008527
   VERSION     NC_008527.1  GI:116510843
   KEYWORDS    .
   SOURCE      Lactococcus lactis subsp. cremoris SK11
     ORGANISM  Lactococcus lactis subsp. cremoris SK11
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Lactococcus.
   REFERENCE   1  (bases 1 to 2438589)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2438589)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2438589)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000425.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662180
               Source DNA and bacteria available from Bart Weimer
               (milkbugs@cc.usu.edu)
               Contacts: Bart Weimer (milkbugs@cc.usu.edu)
                         Larry McKay (lmckay@umn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
               http://www.fidelitysystems.com
               Project Information available at:
               http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
25190 25261 + 72 116510843 LACR_t0019 - 04 Glu tRNA
25267 25356 + 90 116510843 LACR_t0020 - 08 Ser tRNA
25367 25440 + 74 116510843 LACR_t0021 - 16 Met tRNA
25446 25518 + 73 116510843 LACR_t0022 - 17 Phe tRNA
25530 25600 + 71 116510843 LACR_t0023 - 01 Gly tRNA
25615 25688 + 74 116510843 LACR_t0024 - 14 Ile tRNA
25709 25791 + 83 116510843 LACR_r0025 - 5S ribosomal RNA
25813 25886 + 74 116510843 LACR_t0026 - 07 Asn tRNA
40828 40900 + 73 116510843 LACR_t0045 - 10 Lys tRNA
100707 100795 - 89 116510843 LACR_t0108 - 15 Leu tRNA
113775 113861 - 87 116510843 LACR_t0124 - 08 Ser tRNA
145002 145077 - 76 116510843 LACR_t0158 - 12 Thr tRNA
242931 243019 - 89 116510843 LACR_t0261 - 15 Leu tRNA
266943 267030 - 88 116510843 LACR_t0287 - 08 Ser tRNA
275529 275602 + 74 116510843 LACR_t0296 - 11 Arg tRNA
275665 275738 + 74 116510843 LACR_t0297 - 03 Pro tRNA
442168 442238 + 71 116510843 LACR_t0471 - 19 Cys tRNA
466065 466138 + 74 116510843 LACR_t0490 - 11 Arg tRNA
518197 519744 + 1548 116510843 LACR_r0552 - 16S ribosomal RNA
519838 519910 + 73 116510843 LACR_t0553 - 02 Ala tRNA
520049 522949 + 2901 116510843 LACR_r0554 - 23S ribosomal RNA
523033 523148 + 116 116510843 LACR_r0555 - 5S ribosomal RNA
523151 523223 + 73 116510843 LACR_t0556 - 13 Val tRNA
523253 523325 + 73 116510843 LACR_t0557 - 06 Asp tRNA
523343 523415 + 73 116510843 LACR_t0558 - 10 Lys tRNA
523425 523506 + 82 116510843 LACR_t0559 - 15 Leu tRNA
523520 523592 + 73 116510843 LACR_t0560 - 12 Thr tRNA
523618 523689 + 72 116510843 LACR_t0561 - 01 Gly tRNA
523728 523801 + 74 116510843 LACR_t0562 - 11 Arg tRNA
523807 523880 + 74 116510843 LACR_t0563 - 03 Pro tRNA
523918 523991 + 74 116510843 LACR_t0564 - 16 Met tRNA
524004 524077 + 74 116510843 LACR_t0565 - 16 Met tRNA
524085 524157 + 73 116510843 LACR_t0566 - 17 Phe tRNA
524168 524238 + 71 116510843 LACR_t0567 - 01 Gly tRNA
524264 524337 + 74 116510843 LACR_t0568 - 14 Ile tRNA
524380 524467 + 88 116510843 LACR_t0569 - 08 Ser tRNA
593652 593723 + 72 116510843 LACR_t0650 - 11 Arg tRNA
595838 595913 + 76 116510843 LACR_t0653 - 10 Lys tRNA
701024 701097 + 74 116510843 LACR_t0753 - 16 Met tRNA
1050871 1050941 + 71 116510843 LACR_t1131 - 10 Lys tRNA
1442402 1442760 - 359 116510843 LACR_s1521 - tmRNA
1662594 1662654 - 61 116510843 LACR_t1753 - Xaa tRNA
1701366 1701437 - 72 116510843 LACR_t1806 - 05 Gln tRNA
1712611 1712953 - 343 116510843 LACR_r1817 - RNA_RNaseP_classB
1722108 1722180 + 73 116510843 LACR_t1827 - 11 Arg tRNA
2037034 2037119 - 86 116510843 LACR_t2169 - 15 Leu tRNA
2037154 2037225 - 72 116510843 LACR_t2170 - 01 Gly tRNA
2037251 2037323 - 73 116510843 LACR_t2171 - 12 Thr tRNA
2037337 2037418 - 82 116510843 LACR_t2172 - 15 Leu tRNA
2037428 2037500 - 73 116510843 LACR_t2173 - 10 Lys tRNA
2037518 2037590 - 73 116510843 LACR_t2174 - 06 Asp tRNA
2037620 2037692 - 73 116510843 LACR_t2175 - 13 Val tRNA
2037695 2037810 - 116 116510843 LACR_r2176 - 5S ribosomal RNA
2037894 2040794 - 2901 116510843 LACR_r2177 - 23S ribosomal RNA
2040933 2041005 - 73 116510843 LACR_t2178 - 02 Ala tRNA
2041099 2042646 - 1548 116510843 LACR_r2179 - 16S ribosomal RNA
2215035 2215107 - 73 116510843 LACR_t2373 - 12 Thr tRNA
2277714 2277829 - 116 116510843 LACR_r2448 - 5S ribosomal RNA
2277913 2280813 - 2901 116510843 LACR_r2449 - 23S ribosomal RNA
2280952 2281024 - 73 116510843 LACR_t2450 - 02 Ala tRNA
2281118 2282665 - 1548 116510843 LACR_r2451 - 16S ribosomal RNA
2322623 2322738 - 116 116510843 LACR_r2491 - 5S ribosomal RNA
2322822 2325722 - 2901 116510843 LACR_r2492 - 23S ribosomal RNA
2325861 2325933 - 73 116510843 LACR_t2493 - 02 Ala tRNA
2326027 2327574 - 1548 116510843 LACR_r2494 - 16S ribosomal RNA
2354653 2354735 - 83 116510843 LACR_t2523 - 15 Leu tRNA
2396521 2396604 - 84 116510843 LACR_t2563 - 15 Leu tRNA
2396617 2396688 - 72 116510843 LACR_t2564 - 05 Gln tRNA
2396697 2396769 - 73 116510843 LACR_t2565 - 09 His tRNA
2396781 2396851 - 71 116510843 LACR_t2566 - 20 Trp tRNA
2396868 2396948 - 81 116510843 LACR_t2567 - 18 Tyr tRNA
2396984 2397056 - 73 116510843 LACR_t2568 - 13 Val tRNA
2397059 2397174 - 116 116510843 LACR_r2569 - 5S ribosomal RNA
2397258 2400158 - 2901 116510843 LACR_r2570 - 23S ribosomal RNA
2400297 2400369 - 73 116510843 LACR_t2571 - 02 Ala tRNA
2400463 2402010 - 1548 116510843 LACR_r2572 - 16S ribosomal RNA
2432785 2432858 - 74 116510843 LACR_t2604 - 07 Asn tRNA
2432895 2432966 - 72 116510843 LACR_t2605 - 04 Glu tRNA
2432976 2433091 - 116 116510843 LACR_r2606 - 5S ribosomal RNA
2433175 2436075 - 2901 116510843 LACR_r2607 - 23S ribosomal RNA
2436214 2436286 - 73 116510843 LACR_t2608 - 02 Ala tRNA
2436380 2437927 - 1548 116510843 LACR_r2609 - 16S ribosomal RNA