Геном прокариот/Материалы:NC 008527

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008527            2438589 bp    DNA     circular BCT 14-FEB-2007
   DEFINITION  Lactococcus lactis subsp. cremoris SK11, complete genome.
   ACCESSION   NC_008527
   VERSION     NC_008527.1  GI:116510843
   KEYWORDS    .
   SOURCE      Lactococcus lactis subsp. cremoris SK11
     ORGANISM  Lactococcus lactis subsp. cremoris SK11
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Lactococcus.
   REFERENCE   1  (bases 1 to 2438589)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2438589)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2438589)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000425.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662180
               Source DNA and bacteria available from Bart Weimer
               (milkbugs@cc.usu.edu)
               Contacts: Bart Weimer (milkbugs@cc.usu.edu)
                         Larry McKay (lmckay@umn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
               http://www.fidelitysystems.com
               Project Information available at:
               http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
25190	25261	+	72	116510843	LACR_t0019	-	^{04 Glu tRNA}
25267	25356	+	90	116510843	LACR_t0020	-	^{08 Ser tRNA}
25367	25440	+	74	116510843	LACR_t0021	-	^{16 Met tRNA}
25446	25518	+	73	116510843	LACR_t0022	-	^{17 Phe tRNA}
25530	25600	+	71	116510843	LACR_t0023	-	^{01 Gly tRNA}
25615	25688	+	74	116510843	LACR_t0024	-	^{14 Ile tRNA}
25709	25791	+	83	116510843	LACR_r0025	-	5S ribosomal RNA
25813	25886	+	74	116510843	LACR_t0026	-	^{07 Asn tRNA}
40828	40900	+	73	116510843	LACR_t0045	-	^{10 Lys tRNA}
100707	100795	-	89	116510843	LACR_t0108	-	^{15 Leu tRNA}
113775	113861	-	87	116510843	LACR_t0124	-	^{08 Ser tRNA}
145002	145077	-	76	116510843	LACR_t0158	-	^{12 Thr tRNA}
242931	243019	-	89	116510843	LACR_t0261	-	^{15 Leu tRNA}
266943	267030	-	88	116510843	LACR_t0287	-	^{08 Ser tRNA}
275529	275602	+	74	116510843	LACR_t0296	-	^{11 Arg tRNA}
275665	275738	+	74	116510843	LACR_t0297	-	^{03 Pro tRNA}
442168	442238	+	71	116510843	LACR_t0471	-	^{19 Cys tRNA}
466065	466138	+	74	116510843	LACR_t0490	-	^{11 Arg tRNA}
518197	519744	+	1548	116510843	LACR_r0552	-	16S ribosomal RNA
519838	519910	+	73	116510843	LACR_t0553	-	^{02 Ala tRNA}
520049	522949	+	2901	116510843	LACR_r0554	-	23S ribosomal RNA
523033	523148	+	116	116510843	LACR_r0555	-	5S ribosomal RNA
523151	523223	+	73	116510843	LACR_t0556	-	^{13 Val tRNA}
523253	523325	+	73	116510843	LACR_t0557	-	^{06 Asp tRNA}
523343	523415	+	73	116510843	LACR_t0558	-	^{10 Lys tRNA}
523425	523506	+	82	116510843	LACR_t0559	-	^{15 Leu tRNA}
523520	523592	+	73	116510843	LACR_t0560	-	^{12 Thr tRNA}
523618	523689	+	72	116510843	LACR_t0561	-	^{01 Gly tRNA}
523728	523801	+	74	116510843	LACR_t0562	-	^{11 Arg tRNA}
523807	523880	+	74	116510843	LACR_t0563	-	^{03 Pro tRNA}
523918	523991	+	74	116510843	LACR_t0564	-	^{16 Met tRNA}
524004	524077	+	74	116510843	LACR_t0565	-	^{16 Met tRNA}
524085	524157	+	73	116510843	LACR_t0566	-	^{17 Phe tRNA}
524168	524238	+	71	116510843	LACR_t0567	-	^{01 Gly tRNA}
524264	524337	+	74	116510843	LACR_t0568	-	^{14 Ile tRNA}
524380	524467	+	88	116510843	LACR_t0569	-	^{08 Ser tRNA}
593652	593723	+	72	116510843	LACR_t0650	-	^{11 Arg tRNA}
595838	595913	+	76	116510843	LACR_t0653	-	^{10 Lys tRNA}
701024	701097	+	74	116510843	LACR_t0753	-	^{16 Met tRNA}
1050871	1050941	+	71	116510843	LACR_t1131	-	^{10 Lys tRNA}
1442402	1442760	-	359	116510843	LACR_s1521	-	tmRNA
1662594	1662654	-	61	116510843	LACR_t1753	-	Xaa tRNA
1701366	1701437	-	72	116510843	LACR_t1806	-	^{05 Gln tRNA}
1712611	1712953	-	343	116510843	LACR_r1817	-	RNA_RNaseP_classB
1722108	1722180	+	73	116510843	LACR_t1827	-	^{11 Arg tRNA}
2037034	2037119	-	86	116510843	LACR_t2169	-	^{15 Leu tRNA}
2037154	2037225	-	72	116510843	LACR_t2170	-	^{01 Gly tRNA}
2037251	2037323	-	73	116510843	LACR_t2171	-	^{12 Thr tRNA}
2037337	2037418	-	82	116510843	LACR_t2172	-	^{15 Leu tRNA}
2037428	2037500	-	73	116510843	LACR_t2173	-	^{10 Lys tRNA}
2037518	2037590	-	73	116510843	LACR_t2174	-	^{06 Asp tRNA}
2037620	2037692	-	73	116510843	LACR_t2175	-	^{13 Val tRNA}
2037695	2037810	-	116	116510843	LACR_r2176	-	5S ribosomal RNA
2037894	2040794	-	2901	116510843	LACR_r2177	-	23S ribosomal RNA
2040933	2041005	-	73	116510843	LACR_t2178	-	^{02 Ala tRNA}
2041099	2042646	-	1548	116510843	LACR_r2179	-	16S ribosomal RNA
2215035	2215107	-	73	116510843	LACR_t2373	-	^{12 Thr tRNA}
2277714	2277829	-	116	116510843	LACR_r2448	-	5S ribosomal RNA
2277913	2280813	-	2901	116510843	LACR_r2449	-	23S ribosomal RNA
2280952	2281024	-	73	116510843	LACR_t2450	-	^{02 Ala tRNA}
2281118	2282665	-	1548	116510843	LACR_r2451	-	16S ribosomal RNA
2322623	2322738	-	116	116510843	LACR_r2491	-	5S ribosomal RNA
2322822	2325722	-	2901	116510843	LACR_r2492	-	23S ribosomal RNA
2325861	2325933	-	73	116510843	LACR_t2493	-	^{02 Ala tRNA}
2326027	2327574	-	1548	116510843	LACR_r2494	-	16S ribosomal RNA
2354653	2354735	-	83	116510843	LACR_t2523	-	^{15 Leu tRNA}
2396521	2396604	-	84	116510843	LACR_t2563	-	^{15 Leu tRNA}
2396617	2396688	-	72	116510843	LACR_t2564	-	^{05 Gln tRNA}
2396697	2396769	-	73	116510843	LACR_t2565	-	^{09 His tRNA}
2396781	2396851	-	71	116510843	LACR_t2566	-	^{20 Trp tRNA}
2396868	2396948	-	81	116510843	LACR_t2567	-	^{18 Tyr tRNA}
2396984	2397056	-	73	116510843	LACR_t2568	-	^{13 Val tRNA}
2397059	2397174	-	116	116510843	LACR_r2569	-	5S ribosomal RNA
2397258	2400158	-	2901	116510843	LACR_r2570	-	23S ribosomal RNA
2400297	2400369	-	73	116510843	LACR_t2571	-	^{02 Ala tRNA}
2400463	2402010	-	1548	116510843	LACR_r2572	-	16S ribosomal RNA
2432785	2432858	-	74	116510843	LACR_t2604	-	^{07 Asn tRNA}
2432895	2432966	-	72	116510843	LACR_t2605	-	^{04 Glu tRNA}
2432976	2433091	-	116	116510843	LACR_r2606	-	5S ribosomal RNA
2433175	2436075	-	2901	116510843	LACR_r2607	-	23S ribosomal RNA
2436214	2436286	-	73	116510843	LACR_t2608	-	^{02 Ala tRNA}
2436380	2437927	-	1548	116510843	LACR_r2609	-	16S ribosomal RNA