Геном прокариот/Материалы:NC 008529

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008529            1856951 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete
               genome.
   ACCESSION   NC_008529
   VERSION     NC_008529.1  GI:116513228
   KEYWORDS    .
   SOURCE      Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
     ORGANISM  Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1856951)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1856951)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1856951)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000412.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662184
               Source DNA and bacteria available from James L. Steele
               (jlsteele@facstaff.wisc.edu)
               Bacteria also available from ATCC: ATCC BAA-365
               Contacts: James L. Steele (jlsteele@facstaff.wisc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
19366	19438	+	73	116513228	LBUL_t0018	-	^{12 Thr tRNA}
30062	30134	+	73	116513228	LBUL_t0027	-	^{12 Thr tRNA}
43705	45265	+	1561	116513228	LBUL_r0045	-	16S ribosomal RNA
45831	48390	+	2560	116513228	LBUL_r0046	-	23S ribosomal RNA
48463	48565	+	103	116513228	LBUL_r0047	-	5S ribosomal RNA
106604	106679	-	76	116513228	LBUL_t0110	-	^{10 Lys tRNA}
212648	212720	+	73	116513228	LBUL_t0220	-	^{12 Thr tRNA}
278998	279068	-	71	116513228	LBUL_t0292	-	^{01 Gly tRNA}
325067	325138	+	72	116513228	LBUL_t0335	-	^{01 Gly tRNA}
325143	325216	+	74	116513228	LBUL_t0336	-	^{03 Pro tRNA}
325325	325399	+	75	116513228	LBUL_t0337	-	^{01 Gly tRNA}
364493	364564	+	72	116513228	LBUL_t0390	-	^{05 Gln tRNA}
367478	367559	+	82	116513228	LBUL_t0394	-	^{18 Tyr tRNA}
367565	367636	+	72	116513228	LBUL_t0395	-	^{05 Gln tRNA}
382938	383026	+	89	116513228	LBUL_t0410	-	^{15 Leu tRNA}
455591	455665	+	75	116513228	LBUL_t0485	-	^{11 Arg tRNA}
533368	533442	-	75	116513228	LBUL_t0565	-	^{11 Arg tRNA}
575332	575693	+	362	116513228	LBUL_s0619	-	tmRNA
584786	584858	-	73	116513228	LBUL_t0627	-	^{05 Gln tRNA}
584864	584935	-	72	116513228	LBUL_t0628	-	^{04 Glu tRNA}
683265	684825	+	1561	116513228	LBUL_r0728	-	16S ribosomal RNA
684938	685011	+	74	116513228	LBUL_t0729	-	^{14 Ile tRNA}
685081	685153	+	73	116513228	LBUL_t0730	-	^{02 Ala tRNA}
685631	688190	+	2560	116513228	LBUL_r0731	-	23S ribosomal RNA
688262	688364	+	103	116513228	LBUL_r0732	-	5S ribosomal RNA
745956	746044	-	89	116513228	LBUL_t0791	-	^{08 Ser tRNA}
787059	787142	+	84	116513228	LBUL_t0830	-	^{15 Leu tRNA}
792486	794046	+	1561	116513228	LBUL_r0837	-	16S ribosomal RNA
794158	794231	+	74	116513228	LBUL_t0838	-	^{14 Ile tRNA}
794301	794373	+	73	116513228	LBUL_t0839	-	^{02 Ala tRNA}
794850	797409	+	2560	116513228	LBUL_r0840	-	23S ribosomal RNA
797482	797584	+	103	116513228	LBUL_r0841	-	5S ribosomal RNA
800709	800781	+	73	116513228	LBUL_t0844	-	^{07 Asn tRNA}
800785	800858	+	74	116513228	LBUL_t0845	-	^{03 Pro tRNA}
800883	800954	+	72	116513228	LBUL_t0846	-	^{01 Gly tRNA}
800985	801058	+	74	116513228	LBUL_t0847	-	^{11 Arg tRNA}
801061	801133	+	73	116513228	LBUL_t0848	-	^{13 Val tRNA}
801137	801208	+	72	116513228	LBUL_t0849	-	^{04 Glu tRNA}
801251	801338	+	88	116513228	LBUL_t0850	-	^{08 Ser tRNA}
801348	801421	+	74	116513228	LBUL_t0851	-	^{16 Met tRNA}
801425	801498	+	74	116513228	LBUL_t0852	-	^{06 Asp tRNA}
801505	801577	+	73	116513228	LBUL_t0853	-	^{17 Phe tRNA}
801586	801667	+	82	116513228	LBUL_t0854	-	^{18 Tyr tRNA}
801672	801742	+	71	116513228	LBUL_t0855	-	^{20 Trp tRNA}
801756	801831	+	76	116513228	LBUL_t0856	-	^{09 His tRNA}
801858	801928	+	71	116513228	LBUL_t0857	-	^{19 Cys tRNA}
801957	802041	+	85	116513228	LBUL_t0858	-	^{15 Leu tRNA}
862758	863078	+	321	116513228	LBUL_r0923	-	RNA_RNaseP_classB
1088689	1088760	-	72	116513228	LBUL_t1182	-	^{05 Gln tRNA}
1265958	1266031	-	74	116513228	LBUL_t1349	-	^{11 Arg tRNA}
1354121	1354204	+	84	116513228	LBUL_t1445	-	^{15 Leu tRNA}
1369469	1369541	-	73	116513228	LBUL_t1456	-	^{13 Val tRNA}
1369545	1369616	-	72	116513228	LBUL_t1457	-	^{04 Glu tRNA}
1369755	1369828	-	74	116513228	LBUL_t1458	-	^{16 Met tRNA}
1369835	1369925	-	91	116513228	LBUL_t1459	-	^{08 Ser tRNA}
1369934	1370006	-	73	116513228	LBUL_t1460	-	^{07 Asn tRNA}
1370026	1370128	-	103	116513228	LBUL_r1461	-	5S ribosomal RNA
1370201	1372761	-	2561	116513228	LBUL_r1462	-	23S ribosomal RNA
1373238	1373310	-	73	116513228	LBUL_t1463	-	^{02 Ala tRNA}
1373380	1373453	-	74	116513228	LBUL_t1464	-	^{14 Ile tRNA}
1373565	1375125	-	1561	116513228	LBUL_r1465	-	16S ribosomal RNA
1480025	1480101	-	77	116513228	LBUL_t1590	-	^{06 Asp tRNA}
1480128	1480199	-	72	116513228	LBUL_t1591	-	^{04 Glu tRNA}
1480203	1480275	-	73	116513228	LBUL_t1592	-	^{13 Val tRNA}
1480278	1480351	-	74	116513228	LBUL_t1593	-	^{11 Arg tRNA}
1480387	1480458	-	72	116513228	LBUL_t1594	-	^{01 Gly tRNA}
1480507	1480609	-	103	116513228	LBUL_r1595	-	5S ribosomal RNA
1480681	1483240	-	2560	116513228	LBUL_r1596	-	23S ribosomal RNA
1483805	1485365	-	1561	116513228	LBUL_r1597	-	16S ribosomal RNA
1507735	1507807	-	73	116513228	LBUL_t1625	-	^{10 Lys tRNA}
1507842	1507914	-	73	116513228	LBUL_t1626	-	^{10 Lys tRNA}
1507948	1508020	-	73	116513228	LBUL_t1627	-	^{10 Lys tRNA}
1508054	1508126	-	73	116513228	LBUL_t1628	-	^{10 Lys tRNA}
1508160	1508232	-	73	116513228	LBUL_t1629	-	^{10 Lys tRNA}
1510979	1511051	-	73	116513228	LBUL_t1632	-	^{13 Val tRNA}
1511055	1511126	-	72	116513228	LBUL_t1633	-	^{04 Glu tRNA}
1511278	1511366	+	89	116513228	LBUL_t1634	-	^{15 Leu tRNA}
1534485	1534557	-	73	116513228	LBUL_t1656	-	^{12 Thr tRNA}
1554942	1555029	-	88	116513228	LBUL_t1678	-	^{08 Ser tRNA}
1558468	1558570	-	103	116513228	LBUL_r1681	-	5S ribosomal RNA
1558642	1561201	-	2560	116513228	LBUL_r1682	-	23S ribosomal RNA
1561678	1561750	-	73	116513228	LBUL_t1683	-	^{02 Ala tRNA}
1561820	1561893	-	74	116513228	LBUL_t1684	-	^{14 Ile tRNA}
1562005	1563565	-	1561	116513228	LBUL_r1685	-	16S ribosomal RNA
1584544	1584628	-	85	116513228	LBUL_t1711	-	^{15 Leu tRNA}
1584646	1584730	-	85	116513228	LBUL_t1712	-	^{15 Leu tRNA}
1584759	1584829	-	71	116513228	LBUL_t1713	-	^{19 Cys tRNA}
1584856	1584931	-	76	116513228	LBUL_t1714	-	^{09 His tRNA}
1584945	1585015	-	71	116513228	LBUL_t1715	-	^{20 Trp tRNA}
1585020	1585101	-	82	116513228	LBUL_t1716	-	^{18 Tyr tRNA}
1585110	1585182	-	73	116513228	LBUL_t1717	-	^{17 Phe tRNA}
1585189	1585262	-	74	116513228	LBUL_t1718	-	^{06 Asp tRNA}
1585266	1585339	-	74	116513228	LBUL_t1719	-	^{16 Met tRNA}
1585349	1585436	-	88	116513228	LBUL_t1720	-	^{08 Ser tRNA}
1585479	1585550	-	72	116513228	LBUL_t1721	-	^{04 Glu tRNA}
1585809	1585899	-	91	116513228	LBUL_t1722	-	^{08 Ser tRNA}
1585902	1585975	-	74	116513228	LBUL_t1723	-	^{14 Ile tRNA}
1585979	1586049	-	71	116513228	LBUL_t1724	-	^{01 Gly tRNA}
1586064	1586136	-	73	116513228	LBUL_t1725	-	^{17 Phe tRNA}
1586154	1586227	-	74	116513228	LBUL_t1726	-	^{16 Met tRNA}
1586239	1586312	-	74	116513228	LBUL_t1727	-	^{16 Met tRNA}
1586325	1586398	-	74	116513228	LBUL_t1728	-	^{16 Met tRNA}
1586435	1586508	-	74	116513228	LBUL_t1729	-	^{03 Pro tRNA}
1586515	1586588	-	74	116513228	LBUL_t1730	-	^{11 Arg tRNA}
1586594	1586679	-	86	116513228	LBUL_t1731	-	^{15 Leu tRNA}
1586695	1586766	-	72	116513228	LBUL_t1732	-	^{01 Gly tRNA}
1586771	1586843	-	73	116513228	LBUL_t1733	-	^{12 Thr tRNA}
1586855	1586936	-	82	116513228	LBUL_t1734	-	^{15 Leu tRNA}
1586949	1587021	-	73	116513228	LBUL_t1735	-	^{10 Lys tRNA}
1587024	1587096	-	73	116513228	LBUL_t1736	-	^{13 Val tRNA}
1590726	1590828	-	103	116513228	LBUL_r1741	-	5S ribosomal RNA
1590900	1593459	-	2560	116513228	LBUL_r1742	-	23S ribosomal RNA
1593936	1594008	-	73	116513228	LBUL_t1743	-	^{02 Ala tRNA}
1594078	1594151	-	74	116513228	LBUL_t1744	-	^{14 Ile tRNA}
1594263	1595823	-	1561	116513228	LBUL_r1745	-	16S ribosomal RNA
1788751	1788853	-	103	116513228	LBUL_r1964	-	5S ribosomal RNA
1788925	1791484	-	2560	116513228	LBUL_r1965	-	23S ribosomal RNA
1792049	1793609	-	1561	116513228	LBUL_r1966	-	16S ribosomal RNA
1795575	1795648	-	74	116513228	LBUL_t1969	-	^{06 Asp tRNA}
1795652	1795724	-	73	116513228	LBUL_t1970	-	^{13 Val tRNA}
1795727	1795800	-	74	116513228	LBUL_t1971	-	^{11 Arg tRNA}
1795836	1795907	-	72	116513228	LBUL_t1972	-	^{01 Gly tRNA}
1795927	1796000	-	74	116513228	LBUL_t1973	-	^{03 Pro tRNA}
1796004	1796076	-	73	116513228	LBUL_t1974	-	^{07 Asn tRNA}
1796096	1796198	-	103	116513228	LBUL_r1975	-	5S ribosomal RNA
1796270	1798829	-	2560	116513228	LBUL_r1976	-	23S ribosomal RNA
1799394	1800954	-	1561	116513228	LBUL_r1977	-	16S ribosomal RNA