Геном прокариот/Материалы:NC 008531

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   LOCUS       NC_008531            2038396 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete
               genome.
   ACCESSION   NC_008531
   VERSION     NC_008531.1  GI:116617174
   KEYWORDS    .
   SOURCE      Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
     ORGANISM  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
               Bacteria; Firmicutes; Lactobacillales; Leuconostoc.
   REFERENCE   1  (bases 1 to 2038396)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2038396)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2038396)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000414.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662187
               Source DNA and bacteria available from Fred Breidt
               (breidt@ncsu.edu)
               Bacteria also available from ATCC: ATCC 8293
               Contacts: Fred Breidt (breidt@ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
22669 24217 + 1549 116617174 LEUM_r0019 - 16S ribosomal RNA
24330 24402 + 73 116617174 LEUM_t0020 - 02 Ala tRNA
24593 27506 + 2914 116617174 LEUM_r0021 - 23S ribosomal RNA
27624 27712 + 89 116617174 LEUM_r0022 - 5S ribosomal RNA
27762 27855 + 94 116617174 LEUM_t0023 - 08 Ser tRNA
27857 27929 + 73 116617174 LEUM_t0024 - 13 Val tRNA
27970 28042 + 73 116617174 LEUM_t0025 - 12 Thr tRNA
28051 28122 + 72 116617174 LEUM_t0026 - 01 Gly tRNA
28128 28211 + 84 116617174 LEUM_t0027 - 15 Leu tRNA
28217 28290 + 74 116617174 LEUM_t0028 - 11 Arg tRNA
28359 28432 + 74 116617174 LEUM_t0029 - 03 Pro tRNA
28461 28534 + 74 116617174 LEUM_t0030 - 16 Met tRNA
28548 28621 + 74 116617174 LEUM_t0031 - 16 Met tRNA
28646 28735 + 90 116617174 LEUM_t0032 - 08 Ser tRNA
28767 28840 + 74 116617174 LEUM_t0033 - 16 Met tRNA
28843 28916 + 74 116617174 LEUM_t0034 - 06 Asp tRNA
28937 29009 + 73 116617174 LEUM_t0035 - 17 Phe tRNA
29037 29107 + 71 116617174 LEUM_t0036 - 01 Gly tRNA
29140 29213 + 74 116617174 LEUM_t0037 - 14 Ile tRNA
47149 47220 - 72 116617174 LEUM_t0056 - 07 Asn tRNA
114832 114907 - 76 116617174 LEUM_t0132 - 10 Lys tRNA
148404 149952 + 1549 116617174 LEUM_r0163 - 16S ribosomal RNA
150065 150137 + 73 116617174 LEUM_t0164 - 02 Ala tRNA
150328 153241 + 2914 116617174 LEUM_r0165 - 23S ribosomal RNA
153359 153447 + 89 116617174 LEUM_r0166 - 5S ribosomal RNA
153497 153590 + 94 116617174 LEUM_t0167 - 08 Ser tRNA
153592 153664 + 73 116617174 LEUM_t0168 - 13 Val tRNA
153705 153777 + 73 116617174 LEUM_t0169 - 12 Thr tRNA
153786 153857 + 72 116617174 LEUM_t0170 - 01 Gly tRNA
153863 153946 + 84 116617174 LEUM_t0171 - 15 Leu tRNA
153952 154025 + 74 116617174 LEUM_t0172 - 11 Arg tRNA
154094 154167 + 74 116617174 LEUM_t0173 - 03 Pro tRNA
154196 154269 + 74 116617174 LEUM_t0174 - 16 Met tRNA
154283 154356 + 74 116617174 LEUM_t0175 - 16 Met tRNA
154381 154470 + 90 116617174 LEUM_t0176 - 08 Ser tRNA
154502 154575 + 74 116617174 LEUM_t0177 - 16 Met tRNA
154578 154651 + 74 116617174 LEUM_t0178 - 06 Asp tRNA
154672 154744 + 73 116617174 LEUM_t0179 - 17 Phe tRNA
154772 154842 + 71 116617174 LEUM_t0180 - 01 Gly tRNA
154875 154948 + 74 116617174 LEUM_t0181 - 14 Ile tRNA
197140 197222 + 83 116617174 LEUM_t0235 - 18 Tyr tRNA
197260 197334 + 75 116617174 LEUM_t0236 - 05 Gln tRNA
197424 197511 - 88 116617174 LEUM_t0237 - 15 Leu tRNA
205620 205691 - 72 116617174 LEUM_t0245 - Xaa tRNA
247526 247601 + 76 116617174 LEUM_t0291 - 10 Lys tRNA
273252 273609 + 358 116617174 LEUM_s0320 - tmRNA
297748 297834 + 87 116617174 LEUM_t0342 - 15 Leu tRNA
318416 318487 + 72 116617174 LEUM_t0365 - 04 Glu tRNA
367415 367487 + 73 116617174 LEUM_t0407 - 07 Asn tRNA
367594 367666 + 73 116617174 LEUM_t0408 - 07 Asn tRNA
367671 367746 + 76 116617174 LEUM_t0409 - 12 Thr tRNA
370545 370616 - 72 116617174 LEUM_t0413 - 04 Glu tRNA
381019 381090 - 72 116617174 LEUM_t0423 - 05 Gln tRNA
477234 477307 + 74 116617174 LEUM_t0514 - 10 Lys tRNA
500070 500140 + 71 116617174 LEUM_t0535 - 19 Cys tRNA
589604 589679 - 76 116617174 LEUM_t0622 - 11 Arg tRNA
621520 621853 + 334 116617174 LEUM_s0654 - RNA_RNaseP_classB
626478 626552 + 75 116617174 LEUM_t0659 - 04 Glu tRNA
722634 722707 + 74 116617174 LEUM_t0744 - 16 Met tRNA
1311944 1312018 + 75 116617174 LEUM_t1320 - 04 Glu tRNA
1319646 1319719 - 74 116617174 LEUM_t1333 - 11 Arg tRNA
1325872 1325960 - 89 116617174 LEUM_t1341 - 08 Ser tRNA
1461108 1461191 + 84 116617174 LEUM_t1465 - 15 Leu tRNA
1666982 1667053 - 72 116617174 LEUM_t1693 - 07 Asn tRNA
1677110 1677198 - 89 116617174 LEUM_r1705 - 5S ribosomal RNA
1677316 1680229 - 2914 116617174 LEUM_r1706 - 23S ribosomal RNA
1680420 1680492 - 73 116617174 LEUM_t1707 - 02 Ala tRNA
1680605 1682153 - 1549 116617174 LEUM_r1708 - 16S ribosomal RNA
1801982 1802065 - 84 116617174 LEUM_t1826 - 15 Leu tRNA
1802089 1802164 - 76 116617174 LEUM_t1827 - 09 His tRNA
1802167 1802240 - 74 116617174 LEUM_t1828 - 20 Trp tRNA
1802336 1802412 - 77 116617174 LEUM_t1829 - 06 Asp tRNA
1802415 1802487 - 73 116617174 LEUM_t1830 - 13 Val tRNA
1802489 1802582 - 94 116617174 LEUM_t1831 - 08 Ser tRNA
1802632 1802720 - 89 116617174 LEUM_r1832 - 5S ribosomal RNA
1802838 1805751 - 2914 116617174 LEUM_r1833 - 23S ribosomal RNA
1805942 1806014 - 73 116617174 LEUM_t1834 - 02 Ala tRNA
1806127 1807675 - 1549 116617174 LEUM_r1835 - 16S ribosomal RNA
1834566 1834638 - 73 116617174 LEUM_t1858 - 12 Thr tRNA
1834714 1834795 - 82 116617174 LEUM_t1859 - 15 Leu tRNA
1839615 1839689 - 75 116617174 LEUM_t1865 - 04 Glu tRNA
1882699 1882786 - 88 116617174 LEUM_t1914 - 08 Ser tRNA
1893697 1893771 - 75 116617174 LEUM_t1924 - 05 Gln tRNA
1893809 1893891 - 83 116617174 LEUM_t1925 - 18 Tyr tRNA
2022929 2022999 + 71 116617174 LEUM_t2056 - 14 Ile tRNA