Материалы:NC 008577

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008577            4972204 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Shewanella sp. ANA-3 chromosome 1, complete sequence.
   ACCESSION   NC_008577
   VERSION     NC_008577.1  GI:117918459
   KEYWORDS    .
   SOURCE      Shewanella sp. ANA-3
     ORGANISM  Shewanella sp. ANA-3
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4972204)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Newman,D., Salticov,C., Konstantinidis,K., Klappenback,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Shewanella sp. ANA-3
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4972204)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-NOV-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4972204)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000469.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000368
               Source DNA and bacteria available from Jim Fredrickson
               (Jim.fredrickson@pnl.gov)
               Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
50953	52507	+	1555	117918459	Shewana3_R0001	-	16S ribosomal RNA
52804	55698	+	2895	117918459	Shewana3_R0002	-	23S ribosomal RNA
55825	55944	+	120	117918459	Shewana3_R0003	-	5S ribosomal RNA
55972	56048	+	77	117918459	Shewana3_R0004	-	^{06 Asp tRNA}
124437	124527	-	91	117918459	Shewana3_R0005	-	Sec tRNA
215881	217435	+	1555	117918459	Shewana3_R0007	-	16S ribosomal RNA
217493	217569	+	77	117918459	Shewana3_R0008	-	^{14 Ile tRNA}
217615	217690	+	76	117918459	Shewana3_R0009	-	^{02 Ala tRNA}
217962	220856	+	2895	117918459	Shewana3_R0010	-	23S ribosomal RNA
221031	221150	+	120	117918459	Shewana3_R0011	-	5S ribosomal RNA
224512	224587	+	76	117918459	Shewana3_R0012	-	^{12 Thr tRNA}
224595	224679	+	85	117918459	Shewana3_R0013	-	^{18 Tyr tRNA}
224715	224788	+	74	117918459	Shewana3_R0014	-	^{01 Gly tRNA}
224798	224873	+	76	117918459	Shewana3_R0015	-	^{12 Thr tRNA}
267313	268867	+	1555	117918459	Shewana3_R0016	-	16S ribosomal RNA
269160	272054	+	2895	117918459	Shewana3_R0017	-	23S ribosomal RNA
272229	272348	+	120	117918459	Shewana3_R0018	-	5S ribosomal RNA
272391	272467	+	77	117918459	Shewana3_R0019	-	^{06 Asp tRNA}
416452	416528	+	77	117918459	Shewana3_R0020	-	^{11 Arg tRNA}
416582	416657	+	76	117918459	Shewana3_R0021	-	^{09 His tRNA}
416672	416748	+	77	117918459	Shewana3_R0022	-	^{03 Pro tRNA}
416802	416878	+	77	117918459	Shewana3_R0023	-	^{03 Pro tRNA}
692697	692772	+	76	117918459	Shewana3_R0024	-	^{01 Gly tRNA}
692806	692881	+	76	117918459	Shewana3_R0025	-	^{01 Gly tRNA}
693005	693080	+	76	117918459	Shewana3_R0026	-	^{01 Gly tRNA}
693125	693200	+	76	117918459	Shewana3_R0027	-	^{01 Gly tRNA}
859877	859963	+	87	117918459	Shewana3_R0028	-	^{15 Leu tRNA}
1153202	1153278	+	77	117918459	Shewana3_R0030	-	^{20 Trp tRNA}
1184176	1184252	+	77	117918459	Shewana3_R0031	-	^{16 Met tRNA}
1184307	1184391	+	85	117918459	Shewana3_R0032	-	^{15 Leu tRNA}
1184439	1184513	+	75	117918459	Shewana3_R0033	-	^{05 Gln tRNA}
1184536	1184610	+	75	117918459	Shewana3_R0034	-	^{05 Gln tRNA}
1184612	1184688	+	77	117918459	Shewana3_R0035	-	^{16 Met tRNA}
1184772	1184856	+	85	117918459	Shewana3_R0036	-	^{15 Leu tRNA}
1184893	1184967	+	75	117918459	Shewana3_R0037	-	^{05 Gln tRNA}
1199787	1199873	+	87	117918459	Shewana3_R0038	-	^{15 Leu tRNA}
1199957	1200033	+	77	117918459	Shewana3_R0039	-	^{16 Met tRNA}
1332641	1332732	+	92	117918459	Shewana3_R0041	-	^{08 Ser tRNA}
1332751	1332827	+	77	117918459	Shewana3_R0042	-	^{11 Arg tRNA}
1332856	1332932	+	77	117918459	Shewana3_R0043	-	^{11 Arg tRNA}
1333015	1333091	+	77	117918459	Shewana3_R0044	-	^{11 Arg tRNA}
1333135	1333211	+	77	117918459	Shewana3_R0045	-	^{11 Arg tRNA}
1333256	1333332	+	77	117918459	Shewana3_R0046	-	^{11 Arg tRNA}
1333369	1333460	+	92	117918459	Shewana3_R0047	-	^{08 Ser tRNA}
1333555	1333631	+	77	117918459	Shewana3_R0048	-	^{11 Arg tRNA}
1385855	1385930	-	76	117918459	Shewana3_R0049	-	^{12 Thr tRNA}
1385937	1386012	-	76	117918459	Shewana3_R0050	-	^{17 Phe tRNA}
1386491	1386566	-	76	117918459	Shewana3_R0051	-	^{12 Thr tRNA}
1386573	1386648	-	76	117918459	Shewana3_R0052	-	^{17 Phe tRNA}
1528014	1528089	-	76	117918459	Shewana3_R0053	-	^{11 Arg tRNA}
1642623	1642698	-	76	117918459	Shewana3_R0054	-	^{13 Val tRNA}
1642724	1642799	-	76	117918459	Shewana3_R0055	-	^{13 Val tRNA}
1642825	1642900	-	76	117918459	Shewana3_R0056	-	^{13 Val tRNA}
1642942	1643017	-	76	117918459	Shewana3_R0057	-	^{13 Val tRNA}
1643050	1643125	-	76	117918459	Shewana3_R0058	-	^{13 Val tRNA}
1643174	1643249	-	76	117918459	Shewana3_R0059	-	^{13 Val tRNA}
1645352	1645427	+	76	117918459	Shewana3_R0060	-	^{02 Ala tRNA}
1645495	1645570	+	76	117918459	Shewana3_R0061	-	^{04 Glu tRNA}
1645678	1645753	+	76	117918459	Shewana3_R0062	-	^{02 Ala tRNA}
1645818	1645893	+	76	117918459	Shewana3_R0063	-	^{04 Glu tRNA}
1646074	1646149	+	76	117918459	Shewana3_R0064	-	^{04 Glu tRNA}
1646249	1646324	+	76	117918459	Shewana3_R0065	-	^{04 Glu tRNA}
1646424	1646499	+	76	117918459	Shewana3_R0066	-	^{04 Glu tRNA}
1646599	1646674	+	76	117918459	Shewana3_R0067	-	^{04 Glu tRNA}
1646773	1646848	+	76	117918459	Shewana3_R0068	-	^{04 Glu tRNA}
1853365	1854919	+	1555	117918459	Shewana3_R0069	-	16S ribosomal RNA
1854977	1855053	+	77	117918459	Shewana3_R0070	-	^{14 Ile tRNA}
1855099	1855174	+	76	117918459	Shewana3_R0071	-	^{02 Ala tRNA}
1855447	1858341	+	2895	117918459	Shewana3_R0072	-	23S ribosomal RNA
1858517	1858636	+	120	117918459	Shewana3_R0073	-	5S ribosomal RNA
1878016	1878092	-	77	117918459	Shewana3_R0074	-	^{16 Met tRNA}
1878126	1878202	-	77	117918459	Shewana3_R0075	-	^{16 Met tRNA}
1878265	1878341	-	77	117918459	Shewana3_R0076	-	^{16 Met tRNA}
1887764	1887854	+	91	117918459	Shewana3_R0077	-	^{08 Ser tRNA}
1888524	1888614	+	91	117918459	Shewana3_R0078	-	^{08 Ser tRNA}
1892517	1892592	+	76	117918459	Shewana3_R0079	-	^{01 Gly tRNA}
1892613	1892686	+	74	117918459	Shewana3_R0080	-	^{19 Cys tRNA}
1892735	1892821	+	87	117918459	Shewana3_R0081	-	^{15 Leu tRNA}
1892953	1893039	+	87	117918459	Shewana3_R0082	-	^{15 Leu tRNA}
2118528	2118615	+	88	117918459	Shewana3_R0083	-	^{08 Ser tRNA}
2409470	2409546	-	77	117918459	Shewana3_R0085	-	^{13 Val tRNA}
2447726	2447802	-	77	117918459	Shewana3_R0086	-	^{13 Val tRNA}
2447841	2447917	-	77	117918459	Shewana3_R0087	-	^{13 Val tRNA}
2469304	2469394	+	91	117918459	Shewana3_R0088	-	^{08 Ser tRNA}
2546056	2546142	-	87	117918459	Shewana3_R0089	-	^{15 Leu tRNA}
2546192	2546265	-	74	117918459	Shewana3_R0090	-	^{19 Cys tRNA}
2546289	2546364	-	76	117918459	Shewana3_R0091	-	^{01 Gly tRNA}
2591510	2591594	+	85	117918459	Shewana3_R0092	-	^{18 Tyr tRNA}
2591634	2591718	+	85	117918459	Shewana3_R0093	-	^{18 Tyr tRNA}
2591849	2591933	+	85	117918459	Shewana3_R0094	-	^{18 Tyr tRNA}
2597882	2597957	+	76	117918459	Shewana3_R0095	-	^{07 Asn tRNA}
2598005	2598080	+	76	117918459	Shewana3_R0096	-	^{07 Asn tRNA}
2598112	2598187	+	76	117918459	Shewana3_R0097	-	^{07 Asn tRNA}
2598234	2598309	+	76	117918459	Shewana3_R0098	-	^{07 Asn tRNA}
2598356	2598431	+	76	117918459	Shewana3_R0099	-	^{07 Asn tRNA}
2842093	2842169	-	77	117918459	Shewana3_R0100	-	^{06 Asp tRNA}
2842226	2842302	-	77	117918459	Shewana3_R0101	-	^{06 Asp tRNA}
2919047	2919123	-	77	117918459	Shewana3_R0102	-	^{03 Pro tRNA}
3025020	3025095	-	76	117918459	Shewana3_R0104	-	^{10 Lys tRNA}
3025256	3025331	-	76	117918459	Shewana3_R0105	-	^{10 Lys tRNA}
3025492	3025567	-	76	117918459	Shewana3_R0106	-	^{10 Lys tRNA}
3025603	3025678	-	76	117918459	Shewana3_R0107	-	^{10 Lys tRNA}
3025715	3025790	-	76	117918459	Shewana3_R0108	-	^{10 Lys tRNA}
3025826	3025901	-	76	117918459	Shewana3_R0109	-	^{10 Lys tRNA}
3025956	3026031	-	76	117918459	Shewana3_R0110	-	^{10 Lys tRNA}
3155432	3155547	-	116	117918459	Shewana3_R0111	-	SRP RNA; RNA component of signal recognition particle
3179110	3179185	-	76	117918459	Shewana3_R0112	-	^{09 His tRNA}
3179195	3179271	-	77	117918459	Shewana3_R0113	-	^{11 Arg tRNA}
3179381	3179457	-	77	117918459	Shewana3_R0114	-	^{03 Pro tRNA}
3362537	3362688	-	152	117918459	Shewana3_R0115	-	t44 RNA
3545784	3546138	+	355	117918459	Shewana3_R0116	-	tmRNA
3701709	3701785	+	77	117918459	Shewana3_R0117	-	^{16 Met tRNA}
3799898	3800017	-	120	117918459	Shewana3_R0118	-	5S ribosomal RNA
3800194	3803088	-	2895	117918459	Shewana3_R0119	-	23S ribosomal RNA
3803385	3804939	-	1555	117918459	Shewana3_R0120	-	16S ribosomal RNA
3812755	3812830	+	76	117918459	Shewana3_R0121	-	^{17 Phe tRNA}
3812886	3812972	+	87	117918459	Shewana3_R0122	-	^{15 Leu tRNA}
3813017	3813103	+	87	117918459	Shewana3_R0123	-	^{15 Leu tRNA}
4477165	4477284	-	120	117918459	Shewana3_R0128	-	5S ribosomal RNA
4477410	4480304	-	2895	117918459	Shewana3_R0129	-	23S ribosomal RNA
4480602	4482156	-	1555	117918459	Shewana3_R0130	-	16S ribosomal RNA
4483159	4483278	-	120	117918459	Shewana3_R0130a	-	5S ribosomal RNA
4483311	4483386	-	76	117918459	Shewana3_R0131	-	^{12 Thr tRNA}
4483419	4483538	-	120	117918459	Shewana3_R0132	-	5S ribosomal RNA
4483664	4486558	-	2895	117918459	Shewana3_R0133	-	23S ribosomal RNA
4486830	4486905	-	76	117918459	Shewana3_R0134	-	^{02 Ala tRNA}
4486951	4487027	-	77	117918459	Shewana3_R0135	-	^{14 Ile tRNA}
4487087	4488641	-	1555	117918459	Shewana3_R0136	-	16S ribosomal RNA
4658949	4659248	-	300	117918459	Shewana3_R0137	-	RNA component of RNaseP
4692060	4692179	-	120	117918459	Shewana3_R0138	-	5S ribosomal RNA
4692306	4695200	-	2895	117918459	Shewana3_R0139	-	23S ribosomal RNA
4695498	4697052	-	1555	117918459	Shewana3_R0140	-	16S ribosomal RNA
4947657	4947776	-	120	117918459	Shewana3_R0141	-	5S ribosomal RNA
4947950	4950845	-	2896	117918459	Shewana3_R0142	-	23S ribosomal RNA
4951143	4952697	-	1555	117918459	Shewana3_R0143	-	16S ribosomal RNA