Геном прокариот/Материалы:NC 008609
(перенаправлено с «Материалы:NC 008609»)
 |
Базовый уровень статей |
 |
LOCUS NC_008609 4008000 bp DNA circular BCT 12-DEC-2006
DEFINITION Pelobacter propionicus DSM 2379, complete genome.
ACCESSION NC_008609
VERSION NC_008609.1 GI:118578449
KEYWORDS .
SOURCE Pelobacter propionicus DSM 2379
ORGANISM Pelobacter propionicus DSM 2379
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
Pelobacteraceae; Pelobacter.
REFERENCE 1 (bases 1 to 4008000)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Pelobacter propionicus DSM 2379
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4008000)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4008000)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000482.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3436113
Source DNA available from Derek Lovley (dlovley@bio.umass.edu)
Bacteria available from DSMZ: DSM 2379
Contacts: Derek Lovley (dlovley@bio.umass.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 300980 | 301085 | - | 106 | 118578449 | Ppro_R0001 | - | SRP RNA; RNA component of signal recognition particle |
| 301119 | 301209 | - | 91 | 118578449 | Ppro_R0002 | - | 08 Ser tRNA |
| 354755 | 354841 | + | 87 | 118578449 | Ppro_R0003 | - | 15 Leu tRNA |
| 440109 | 440184 | - | 76 | 118578449 | Ppro_R0004 | - | 02 Ala tRNA |
| 654762 | 654849 | + | 88 | 118578449 | Ppro_R0006 | - | 08 Ser tRNA |
| 703558 | 703633 | + | 76 | 118578449 | Ppro_R0007 | - | 12 Thr tRNA |
| 703659 | 703743 | + | 85 | 118578449 | Ppro_R0008 | - | 18 Tyr tRNA |
| 703849 | 703925 | + | 77 | 118578449 | Ppro_R0009 | - | 01 Gly tRNA |
| 703934 | 704009 | + | 76 | 118578449 | Ppro_R0010 | - | 12 Thr tRNA |
| 705513 | 705589 | + | 77 | 118578449 | Ppro_R0011 | - | 20 Trp tRNA |
| 778119 | 778193 | + | 75 | 118578449 | Ppro_R0012 | - | 05 Gln tRNA |
| 1067193 | 1067269 | - | 77 | 118578449 | Ppro_R0014 | - | 16 Met tRNA |
| 1175857 | 1175933 | - | 77 | 118578449 | Ppro_R0015 | - | 11 Arg tRNA |
| 1233155 | 1233231 | - | 77 | 118578449 | Ppro_R0017 | - | 06 Asp tRNA |
| 1233253 | 1233328 | - | 76 | 118578449 | Ppro_R0018 | - | 13 Val tRNA |
| 1233339 | 1233415 | - | 77 | 118578449 | Ppro_R0019 | - | 06 Asp tRNA |
| 1237262 | 1237346 | - | 85 | 118578449 | Ppro_R0020 | - | 15 Leu tRNA |
| 1352684 | 1354234 | + | 1551 | 118578449 | Ppro_R0021 | - | 16S ribosomal RNA |
| 1354380 | 1354456 | + | 77 | 118578449 | Ppro_R0022 | - | 14 Ile tRNA |
| 1354479 | 1354554 | + | 76 | 118578449 | Ppro_R0023 | - | 02 Ala tRNA |
| 1355114 | 1357669 | + | 2556 | 118578449 | Ppro_R0024 | - | 23S ribosomal RNA |
| 1357807 | 1357923 | + | 117 | 118578449 | Ppro_R0025 | - | 5S ribosomal RNA |
| 1386949 | 1387299 | + | 351 | 118578449 | Ppro_R0026 | - | |
| 1399089 | 1399164 | - | 76 | 118578449 | Ppro_R0027 | - | 12 Thr tRNA |
| 1409531 | 1409606 | - | 76 | 118578449 | Ppro_R0028 | - | 12 Thr tRNA |
| 1433913 | 1433999 | + | 87 | 118578449 | Ppro_R0029 | - | 15 Leu tRNA |
| 1444993 | 1445069 | + | 77 | 118578449 | Ppro_R0030 | - | 03 Pro tRNA |
| 1526541 | 1526615 | + | 75 | 118578449 | Ppro_R0031 | - | 13 Val tRNA |
| 1803507 | 1805057 | + | 1551 | 118578449 | Ppro_R0032 | - | 16S ribosomal RNA |
| 1805203 | 1805279 | + | 77 | 118578449 | Ppro_R0033 | - | 14 Ile tRNA |
| 1805302 | 1805377 | + | 76 | 118578449 | Ppro_R0034 | - | 02 Ala tRNA |
| 1805937 | 1808492 | + | 2556 | 118578449 | Ppro_R0035 | - | 23S ribosomal RNA |
| 1808630 | 1808746 | + | 117 | 118578449 | Ppro_R0036 | - | 5S ribosomal RNA |
| 1823398 | 1823484 | + | 87 | 118578449 | Ppro_R0037 | - | 15 Leu tRNA |
| 1830984 | 1831059 | - | 76 | 118578449 | Ppro_R0038 | - | 09 His tRNA |
| 1930956 | 1931029 | - | 74 | 118578449 | Ppro_R0039 | - | 05 Gln tRNA |
| 2071223 | 2071310 | - | 88 | 118578449 | Ppro_R0040 | - | 08 Ser tRNA |
| 2304326 | 2304411 | - | 86 | 118578449 | Ppro_R0041 | - | 15 Leu tRNA |
| 2304533 | 2304608 | + | 76 | 118578449 | Ppro_R0042 | - | 02 Ala tRNA |
| 2365165 | 2365241 | + | 77 | 118578449 | Ppro_R0043 | - | 11 Arg tRNA |
| 2483721 | 2483797 | - | 77 | 118578449 | Ppro_R0044 | - | 03 Pro tRNA |
| 2491448 | 2491522 | - | 75 | 118578449 | Ppro_R0045 | - | 13 Val tRNA |
| 2548510 | 2548586 | + | 77 | 118578449 | Ppro_R0046 | - | 11 Arg tRNA |
| 2593266 | 2593340 | - | 75 | 118578449 | Ppro_R0047 | - | 01 Gly tRNA |
| 2801748 | 2801822 | - | 75 | 118578449 | Ppro_R0048 | - | 01 Gly tRNA |
| 2882101 | 2882177 | + | 77 | 118578449 | Ppro_R0049 | - | 16 Met tRNA |
| 2882748 | 2882864 | - | 117 | 118578449 | Ppro_R0050 | - | 5S ribosomal RNA |
| 2883002 | 2885557 | - | 2556 | 118578449 | Ppro_R0051 | - | 23S ribosomal RNA |
| 2886117 | 2886192 | - | 76 | 118578449 | Ppro_R0052 | - | 02 Ala tRNA |
| 2886215 | 2886291 | - | 77 | 118578449 | Ppro_R0053 | - | 14 Ile tRNA |
| 2886437 | 2887987 | - | 1551 | 118578449 | Ppro_R0054 | - | 16S ribosomal RNA |
| 2898043 | 2898119 | - | 77 | 118578449 | Ppro_R0055 | - | 11 Arg tRNA |
| 2907772 | 2907846 | + | 75 | 118578449 | Ppro_R0056 | - | 19 Cys tRNA |
| 2999897 | 2999973 | + | 77 | 118578449 | Ppro_R0057 | - | 11 Arg tRNA |
| 3213600 | 3213692 | - | 93 | 118578449 | Ppro_R0058 | - | 08 Ser tRNA |
| 3216305 | 3216380 | + | 76 | 118578449 | Ppro_R0059 | - | 17 Phe tRNA |
| 3331023 | 3331139 | - | 117 | 118578449 | Ppro_R0060 | - | 5S ribosomal RNA |
| 3331277 | 3333832 | - | 2556 | 118578449 | Ppro_R0061 | - | 23S ribosomal RNA |
| 3334392 | 3334467 | - | 76 | 118578449 | Ppro_R0062 | - | 02 Ala tRNA |
| 3334490 | 3334566 | - | 77 | 118578449 | Ppro_R0063 | - | 14 Ile tRNA |
| 3334711 | 3336261 | - | 1551 | 118578449 | Ppro_R0064 | - | 16S ribosomal RNA |
| 3386631 | 3386706 | + | 76 | 118578449 | Ppro_R0065 | - | 10 Lys tRNA |
| 3386761 | 3386836 | + | 76 | 118578449 | Ppro_R0066 | - | 10 Lys tRNA |
| 3386959 | 3387036 | + | 78 | 118578449 | Ppro_R0067 | - | 04 Glu tRNA |
| 3435422 | 3435497 | - | 76 | 118578449 | Ppro_R0068 | - | 07 Asn tRNA |
| 3639885 | 3639961 | - | 77 | 118578449 | Ppro_R0070 | - | 16 Met tRNA |
| 3929479 | 3929555 | - | 77 | 118578449 | Ppro_R0071 | - | 03 Pro tRNA |