Геном прокариот/Материалы:NC 008610

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   LOCUS       NC_008610            1160782 bp    DNA     circular BCT 26-FEB-2007
   DEFINITION  Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),
               complete genome.
   ACCESSION   NC_008610
   VERSION     NC_008610.1  GI:118602060
   KEYWORDS    .
   SOURCE      Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
     ORGANISM  Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
               Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing
               symbionts.
   REFERENCE   1  (bases 1 to 1160782)
     AUTHORS   Newton,I.L., Woyke,T., Auchtung,T.A., Dilly,G.F., Dutton,R.J.,
               Fisher,M.C., Fontanez,K.M., Lau,E., Stewart,F.J., Richardson,P.M.,
               Barry,K.W., Saunders,E., Detter,J.C., Wu,D., Eisen,J.A. and
               Cavanaugh,C.M.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The Calyptogena magnifica chemoautotrophic symbiont genome
     JOURNAL   Science 315 (5814), 998-1000 (2007)
      PUBMED   17303757
   REFERENCE   2  (bases 1 to 1160782)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1160782)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (29-NOV-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000488.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000245
               Source DNA and bacteria available from Colleen M. Cavanaugh
               (cavanaug@fas.harvard.edu)
               Contacts: Colleen M. Cavanaugh (cavanaug@fas.harvard.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
47921 47996 + 76 118602060 Rmag_R0001 - 12 Thr tRNA
53269 53344 + 76 118602060 Rmag_R0002 - 17 Phe tRNA
60338 60414 + 77 118602060 Rmag_R0003 - 16 Met tRNA
71406 71482 + 77 118602060 Rmag_R0004 - 16 Met tRNA
127740 127816 - 77 118602060 Rmag_R0005 - 16 Met tRNA
130754 130828 - 75 118602060 Rmag_R0006 - 05 Gln tRNA
177719 177792 - 74 118602060 Rmag_R0007 - 19 Cys tRNA
177865 177940 - 76 118602060 Rmag_R0008 - 01 Gly tRNA
178612 178688 - 77 118602060 Rmag_R0009 - 11 Arg tRNA
295585 295671 + 87 118602060 Rmag_R0010 - 15 Leu tRNA
355140 355215 + 76 118602060 Rmag_R0011 - 02 Ala tRNA
355237 355311 + 75 118602060 Rmag_R0012 - 04 Glu tRNA
355375 355449 + 75 118602060 Rmag_R0013 - 04 Glu tRNA
440344 440419 - 76 118602060 Rmag_R0014 - 09 His tRNA
442219 442295 - 77 118602060 Rmag_R0015 - 11 Arg tRNA
442344 442420 - 77 118602060 Rmag_R0016 - 03 Pro tRNA
463030 463105 + 76 118602060 Rmag_R0017 - 07 Asn tRNA
470448 470524 - 77 118602060 Rmag_R0018 - 11 Arg tRNA
471419 471495 + 77 118602060 Rmag_R0019 - 13 Val tRNA
514527 514641 - 115 118602060 Rmag_R0020 - SRP RNA; RNA component of signal recognition particle
621148 621235 - 88 118602060 Rmag_R0021 - 08 Ser tRNA
645473 645548 - 76 118602060 Rmag_R0022 - 10 Lys tRNA
672337 672413 - 77 118602060 Rmag_R0023 - 11 Arg tRNA
688967 689043 - 77 118602060 Rmag_R0024 - 03 Pro tRNA
708434 708510 - 77 118602060 Rmag_R0025 - 06 Asp tRNA
708521 708596 - 76 118602060 Rmag_R0026 - 13 Val tRNA
840670 840959 - 290 118602060 Rmag_R0027 - RNA component of RNaseP
873976 874051 - 76 118602060 Rmag_R0028 - 20 Trp tRNA
875358 875433 - 76 118602060 Rmag_R0029 - 12 Thr tRNA
875449 875522 - 74 118602060 Rmag_R0030 - 01 Gly tRNA
875540 875624 - 85 118602060 Rmag_R0031 - 18 Tyr tRNA
893674 893765 + 92 118602060 Rmag_R0032 - 08 Ser tRNA
909057 909141 - 85 118602060 Rmag_R0033 - 15 Leu tRNA
989716 989802 + 87 118602060 Rmag_R0034 - 15 Leu tRNA
1058349 1058438 + 90 118602060 Rmag_R0035 - 08 Ser tRNA
1077264 1077379 - 116 118602060 Rmag_R0036 - 5S ribosomal RNA
1077544 1080173 - 2630 118602060 Rmag_R0037 - 23S ribosomal RNA
1080775 1080850 - 76 118602060 Rmag_R0038 - 02 Ala tRNA
1080975 1081051 - 77 118602060 Rmag_R0039 - 14 Ile tRNA
1081270 1082807 - 1538 118602060 Rmag_R0040 - 16S ribosomal RNA
1159047 1159132 - 86 118602060 Rmag_R0041 - 15 Leu tRNA