Геном прокариот/Материалы:NC 008639

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   LOCUS       NC_008639            3133902 bp    DNA     circular BCT 12-DEC-2006
   DEFINITION  Chlorobium phaeobacteroides DSM 266, complete genome.
   ACCESSION   NC_008639
   VERSION     NC_008639.1  GI:119355857
   KEYWORDS    .
   SOURCE      Chlorobium phaeobacteroides DSM 266
     ORGANISM  Chlorobium phaeobacteroides DSM 266
               Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
               Chlorobium/Pelodictyon group; Chlorobium.
   REFERENCE   1  (bases 1 to 3133902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
               Overmann,J., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chlorobium phaeobacteroides DSM 266
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3133902)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3133902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
               Overmann,J., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000492.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634474
               Source DNA and bacteria available from Donald A. Bryant
               (dab14@psu.edu)
               Bacteria available from DSMZ: DSM 266
               Contacts: Donald A. Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
51893 51965 - 73 119355857 Cpha266_R0001 - 12 Thr tRNA
193926 194001 - 76 119355857 Cpha266_R0002 - 11 Arg tRNA
252936 253008 + 73 119355857 Cpha266_R0003 - 12 Thr tRNA
253022 253104 + 83 119355857 Cpha266_R0004 - 18 Tyr tRNA
253131 253203 + 73 119355857 Cpha266_R0005 - 12 Thr tRNA
253227 253302 + 76 119355857 Cpha266_R0006 - 20 Trp tRNA
337928 338001 + 74 119355857 Cpha266_R0007 - 03 Pro tRNA
366885 366973 - 89 119355857 Cpha266_R0008 - 15 Leu tRNA
436026 436098 + 73 119355857 Cpha266_R0009 - 10 Lys tRNA
436115 436196 + 82 119355857 Cpha266_R0010 - 15 Leu tRNA
473467 473542 + 76 119355857 Cpha266_R0011 - 17 Phe tRNA
713392 713468 + 77 119355857 Cpha266_R0012 - 13 Val tRNA
918432 918507 - 76 119355857 Cpha266_R0013 - 05 Gln tRNA
919497 919570 - 74 119355857 Cpha266_R0014 - 11 Arg tRNA
919575 919651 - 77 119355857 Cpha266_R0015 - 04 Glu tRNA
919687 919760 - 74 119355857 Cpha266_R0016 - 16 Met tRNA
1009928 1010327 + 400 119355857 Cpha266_R0017 - tmRNA
1048324 1048398 + 75 119355857 Cpha266_R0018 - 05 Gln tRNA
1053155 1053227 + 73 119355857 Cpha266_R0019 - 03 Pro tRNA
1053256 1053331 + 76 119355857 Cpha266_R0020 - 11 Arg tRNA
1053357 1053430 + 74 119355857 Cpha266_R0021 - 09 His tRNA
1053442 1053513 + 72 119355857 Cpha266_R0022 - 04 Glu tRNA
1059928 1060003 + 76 119355857 Cpha266_R0023 - 10 Lys tRNA
1099660 1099746 - 87 119355857 Cpha266_R0024 - 15 Leu tRNA
1099807 1099888 - 82 119355857 Cpha266_R0025 - 15 Leu tRNA
1150601 1150676 - 76 119355857 Cpha266_R0026 - 16 Met tRNA
1327970 1328042 + 73 119355857 Cpha266_R0027 - 11 Arg tRNA
1328059 1328131 + 73 119355857 Cpha266_R0028 - 03 Pro tRNA
1663969 1664045 + 77 119355857 Cpha266_R0029 - 13 Val tRNA
1719488 1719561 + 74 119355857 Cpha266_R0030 - 19 Cys tRNA
1850219 1850311 - 93 119355857 Cpha266_R0031 - 08 Ser tRNA
1850324 1850409 - 86 119355857 Cpha266_R0032 - 08 Ser tRNA
1850607 1850697 - 91 119355857 Cpha266_R0033 - 08 Ser tRNA
1872397 1872470 + 74 119355857 Cpha266_R0034 - 16 Met tRNA
1872482 1872557 + 76 119355857 Cpha266_R0035 - 01 Gly tRNA
1953685 1953769 + 85 119355857 Cpha266_R0036 - 15 Leu tRNA
1954821 1955167 + 347 119355857 Cpha266_R0037 - RNaseP RNA
2254342 2254414 + 73 119355857 Cpha266_R0038 - 01 Gly tRNA
2254640 2254729 + 90 119355857 Cpha266_R0039 - 08 Ser tRNA
2296966 2297038 + 73 119355857 Cpha266_R0040 - 02 Ala tRNA
2417293 2417367 + 75 119355857 Cpha266_R0041 - 06 Asp tRNA
2793075 2793147 - 73 119355857 Cpha266_R0042 - 01 Gly tRNA
2855225 2855296 - 72 119355857 Cpha266_R0043 - 07 Asn tRNA
2895049 2895158 - 110 119355857 Cpha266_R0044 - 5S ribosomal RNA
2895264 2898182 - 2919 119355857 Cpha266_R0045 - 23S ribosomal RNA
2898388 2898463 - 76 119355857 Cpha266_R0046 - 02 Ala tRNA
2898497 2898573 - 77 119355857 Cpha266_R0047 - 14 Ile tRNA
2898750 2900243 - 1494 119355857 Cpha266_R0048 - 16S ribosomal RNA
3047185 3047294 - 110 119355857 Cpha266_R0049 - 5S ribosomal RNA
3047399 3050317 - 2919 119355857 Cpha266_R0050 - 23S ribosomal RNA
3050523 3050598 - 76 119355857 Cpha266_R0051 - 02 Ala tRNA
3050632 3050708 - 77 119355857 Cpha266_R0052 - 14 Ile tRNA
3050885 3052378 - 1494 119355857 Cpha266_R0053 - 16S ribosomal RNA
3074175 3074248 - 74 119355857 Cpha266_R0054 - 13 Val tRNA
3092183 3092288 - 106 119355857 Cpha266_R0055 - SRP RNA; RNA component of signal recognition particle
3098078 3098150 - 73 119355857 Cpha266_R0056 - 02 Ala tRNA