Геном прокариот/Материалы:NC 008686

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   LOCUS       NC_008686            2852282 bp    DNA     circular BCT 09-AUG-2007
   DEFINITION  Paracoccus denitrificans PD1222 chromosome 1, complete sequence.
   ACCESSION   NC_008686
   VERSION     NC_008686.1  GI:119382757
   KEYWORDS    .
   SOURCE      Paracoccus denitrificans PD1222
     ORGANISM  Paracoccus denitrificans PD1222
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Paracoccus.
   REFERENCE   1  (bases 1 to 2852282)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
               van Spanning,R.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Paracoccus denitrificans
               PD1222
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2852282)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2852282)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
               van Spanning,R.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000489.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634481
               Source DNA and bacteria available from Stephen Spiro
               (stephen.spiro@utdallas.edu)
               Contacts: Stephen Spiro (stephen.spiro@utdallas.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               There is an unverified repetitive structure in the vicinity of
               complement(2413304-2418104)
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
48588 48662 - 75 119382757 Pden_R0001 - 13 Val tRNA
58447 59902 + 1456 119382757 Pden_R0002 - 16S ribosomal RNA
60071 60147 + 77 119382757 Pden_R0003 - 14 Ile tRNA
60210 60285 + 76 119382757 Pden_R0004 - 02 Ala tRNA
60609 63451 + 2843 119382757 Pden_R0005 - 23S ribosomal RNA
63561 63682 + 122 119382757 Pden_R0006 - 5S ribosomal RNA
63740 63816 + 77 119382757 Pden_R0007 - 16 Met tRNA
361057 361146 + 90 119382757 Pden_R0008 - 08 Ser tRNA
364942 365017 - 76 119382757 Pden_R0009 - 10 Lys tRNA
411262 411338 + 77 119382757 Pden_R0010 - 03 Pro tRNA
466890 466974 + 85 119382757 Pden_R0011 - 15 Leu tRNA
506103 506176 - 74 119382757 Pden_R0012 - 01 Gly tRNA
722941 723016 + 76 119382757 Pden_R0013 - 20 Trp tRNA
848876 848952 + 77 119382757 Pden_R0014 - 03 Pro tRNA
857717 857793 - 77 119382757 Pden_R0015 - 11 Arg tRNA
894322 894398 + 77 119382757 Pden_R0016 - 16 Met tRNA
948593 948682 + 90 119382757 Pden_R0017 - 08 Ser tRNA
1178499 1178575 + 77 119382757 Pden_R0018 - 06 Asp tRNA
1195017 1195091 - 75 119382757 Pden_R0019 - 05 Gln tRNA
1274404 1274493 - 90 119382757 Pden_R0020 - 08 Ser tRNA
1343520 1343603 - 84 119382757 Pden_R0021 - 15 Leu tRNA
1523471 1523547 - 77 119382757 Pden_R0022 - 09 His tRNA
1565680 1565769 + 90 119382757 Pden_R0023 - 08 Ser tRNA
1725856 1725931 + 76 119382757 Pden_R0024 - 02 Ala tRNA
1747394 1747494 + 101 119382757 Pden_R0025 -
1761801 1761875 + 75 119382757 Pden_R0026 - 07 Asn tRNA
1769711 1769785 - 75 119382757 Pden_R0027 - 04 Glu tRNA
1771692 1771765 - 74 119382757 Pden_R0028 - 01 Gly tRNA
1786959 1787034 + 76 119382757 Pden_R0029 - 17 Phe tRNA
1788974 1789050 - 77 119382757 Pden_R0030 - 11 Arg tRNA
1806275 1806376 + 102 119382757 Pden_R0031 - SRP RNA; RNA component of signal recognition particle
1863668 1863745 + 78 119382757 Pden_R0032 - 03 Pro tRNA
1879838 1879912 + 75 119382757 Pden_R0033 - 04 Glu tRNA
1907794 1907870 - 77 119382757 Pden_R0034 - 06 Asp tRNA
1907899 1907975 - 77 119382757 Pden_R0035 - 06 Asp tRNA
1931540 1931626 - 87 119382757 Pden_R0036 - 15 Leu tRNA
1965201 1965275 + 75 119382757 Pden_R0037 - 12 Thr tRNA
1974456 1974532 - 77 119382757 Pden_R0038 - 16 Met tRNA
1974590 1974711 - 122 119382757 Pden_R0039 - 5S ribosomal RNA
1974821 1977663 - 2843 119382757 Pden_R0040 - 23S ribosomal RNA
1977987 1978062 - 76 119382757 Pden_R0041 - 02 Ala tRNA
1978125 1978201 - 77 119382757 Pden_R0042 - 14 Ile tRNA
1978370 1979825 - 1456 119382757 Pden_R0043 - 16S ribosomal RNA
1982093 1982169 - 77 119382757 Pden_R0044 - 11 Arg tRNA
2000687 2000762 - 76 119382757 Pden_R0045 - 12 Thr tRNA
2057161 2057246 + 86 119382757 Pden_R0046 - 15 Leu tRNA
2281331 2281406 - 76 119382757 Pden_R0047 - 16 Met tRNA
2341732 2341807 - 76 119382757 Pden_R0048 - 02 Ala tRNA
2387713 2387787 + 75 119382757 Pden_R0049 - 01 Gly tRNA
2423242 2423315 + 74 119382757 Pden_R0050 - 19 Cys tRNA
2841537 2841628 - 92 119382757 Pden_R0051 - Sec tRNA