Геном прокариот/Материалы:NC 008699

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008699            4985871 bp    DNA     circular BCT 21-DEC-2006
   DEFINITION  Nocardioides sp. JS614, complete genome.
   ACCESSION   NC_008699
   VERSION     NC_008699.1  GI:119714272
   KEYWORDS    .
   SOURCE      Nocardioides sp. JS614
     ORGANISM  Nocardioides sp. JS614
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Propionibacterineae; Nocardioidaceae; Nocardioides.
   REFERENCE   1  (bases 1 to 4985871)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
               Gossett,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Nocardioides sp. JS614
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4985871)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4985871)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
               Gossett,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000509.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634503
               Source DNA and bacteria available from James Gossett
               (jmg18@cornell.edu)
               Contacts: James Gossett (jmg18@cornell.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11935	12008	+	74	119714272	Noca_R0001	-	^{14 Ile tRNA}
12276	12351	+	76	119714272	Noca_R0002	-	^{02 Ala tRNA}
32617	32700	+	84	119714272	Noca_R0003	-	^{15 Leu tRNA}
196527	196614	-	88	119714272	Noca_R0004	-	^{08 Ser tRNA}
197696	197788	+	93	119714272	Noca_R0005	-	^{08 Ser tRNA}
202663	202735	+	73	119714272	Noca_R0006	-	^{11 Arg tRNA}
303375	303464	+	90	119714272	Noca_R0007	-	^{08 Ser tRNA}
339643	339731	-	89	119714272	Noca_R0008	-	^{08 Ser tRNA}
339855	339945	+	91	119714272	Noca_R0009	-	SRP RNA; RNA component of signal recognition particle
347117	347193	-	77	119714272	Noca_R0010	-	^{03 Pro tRNA}
425150	425225	+	76	119714272	Noca_R0011	-	^{12 Thr tRNA}
595077	595158	+	82	119714272	Noca_R0012	-	^{18 Tyr tRNA}
709261	709333	+	73	119714272	Noca_R0013	-	^{12 Thr tRNA}
709389	709462	+	74	119714272	Noca_R0014	-	^{16 Met tRNA}
733698	733773	+	76	119714272	Noca_R0015	-	^{20 Trp tRNA}
827249	827324	-	76	119714272	Noca_R0016	-	^{11 Arg tRNA}
838947	839022	+	76	119714272	Noca_R0017	-	^{02 Ala tRNA}
950002	950080	+	79	119714272	Noca_R0018	-	^{05 Gln tRNA}
981354	981430	+	77	119714272	Noca_R0019	-	^{15 Leu tRNA}
1348591	1348958	+	368	119714272	Noca_R0021	-
1396961	1397045	-	85	119714272	Noca_R0022	-	^{15 Leu tRNA}
1410376	1410451	-	76	119714272	Noca_R0023	-	^{10 Lys tRNA}
1428940	1429015	-	76	119714272	Noca_R0024	-	^{09 His tRNA}
1436447	1436523	-	77	119714272	Noca_R0025	-	^{11 Arg tRNA}
1625605	1625681	+	77	119714272	Noca_R0026	-	^{16 Met tRNA}
1693513	1693597	+	85	119714272	Noca_R0027	-	^{16 Met tRNA}
1850749	1850821	-	73	119714272	Noca_R0028	-	^{11 Arg tRNA}
1942709	1942784	+	76	119714272	Noca_R0029	-	^{02 Ala tRNA}
2081097	2081169	+	73	119714272	Noca_R0030	-	^{07 Asn tRNA}
2095934	2096010	+	77	119714272	Noca_R0031	-	^{16 Met tRNA}
2113497	2115016	+	1520	119714272	Noca_R0032	-	16S ribosomal RNA
2115459	2118586	+	3128	119714272	Noca_R0033	-	23S ribosomal RNA
2118714	2118830	+	117	119714272	Noca_R0034	-	5S ribosomal RNA
2136462	2136536	+	75	119714272	Noca_R0035	-	^{13 Val tRNA}
2178789	2179125	-	337	119714272	Noca_R0036	-	rnpB RNA
2523391	2523465	-	75	119714272	Noca_R0037	-	^{13 Val tRNA}
2523490	2523563	-	74	119714272	Noca_R0038	-	^{19 Cys tRNA}
2523595	2523667	-	73	119714272	Noca_R0039	-	^{01 Gly tRNA}
2525215	2525289	+	75	119714272	Noca_R0040	-	^{13 Val tRNA}
2638556	2640075	+	1520	119714272	Noca_R0041	-	16S ribosomal RNA
2640518	2643645	+	3128	119714272	Noca_R0042	-	23S ribosomal RNA
2643773	2643889	+	117	119714272	Noca_R0043	-	5S ribosomal RNA
2671978	2672054	+	77	119714272	Noca_R0044	-	^{03 Pro tRNA}
2788065	2788153	-	89	119714272	Noca_R0045	-	^{15 Leu tRNA}
3215698	3215771	+	74	119714272	Noca_R0046	-	^{15 Leu tRNA}
3539648	3539723	-	76	119714272	Noca_R0048	-	^{04 Glu tRNA}
3539813	3539887	-	75	119714272	Noca_R0049	-	^{05 Gln tRNA}
3690972	3691044	-	73	119714272	Noca_R0050	-	^{03 Pro tRNA}
3691089	3691162	-	74	119714272	Noca_R0051	-	^{01 Gly tRNA}
4231439	4231514	-	76	119714272	Noca_R0053	-	^{12 Thr tRNA}
4514690	4514765	+	76	119714272	Noca_R0054	-	^{10 Lys tRNA}
4533618	4533694	-	77	119714272	Noca_R0055	-	^{06 Asp tRNA}
4533809	4533884	-	76	119714272	Noca_R0056	-	^{04 Glu tRNA}
4534026	4534102	+	77	119714272	Noca_R0057	-	^{17 Phe tRNA}
4668644	4668719	+	76	119714272	Noca_R0058	-	^{01 Gly tRNA}