Геном прокариот/Материалы:NC 008709

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008709            4559598 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Psychromonas ingrahamii 37, complete genome.
   ACCESSION   NC_008709
   VERSION     NC_008709.1  GI:119943794
   KEYWORDS    .
   SOURCE      Psychromonas ingrahamii 37
     ORGANISM  Psychromonas ingrahamii 37
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Psychromonadaceae; Psychromonas.
   REFERENCE   1  (bases 1 to 4559598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Psychromonas ingrahamii 37
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4559598)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4559598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000510.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000833
               Source DNA and bacteria available from James Staley
               (jstaley@u.washington.edu)
               Contacts: James Staley (jstaley@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
137	1675	+	1539	119943794	Ping_R0001	-	16S ribosomal RNA
1822	1898	+	77	119943794	Ping_R0002	-	^{14 Ile tRNA}
1949	2024	+	76	119943794	Ping_R0003	-	^{02 Ala tRNA}
2504	5395	+	2892	119943794	Ping_R0004	-	23S ribosomal RNA
5697	5812	+	116	119943794	Ping_R0005	-	5S ribosomal RNA
91410	92948	+	1539	119943794	Ping_R0006	-	16S ribosomal RNA
93088	93163	+	76	119943794	Ping_R0007	-	^{04 Glu tRNA}
93714	96605	+	2892	119943794	Ping_R0008	-	23S ribosomal RNA
96807	96922	+	116	119943794	Ping_R0009	-	5S ribosomal RNA
275625	275700	+	76	119943794	Ping_R0010	-	^{12 Thr tRNA}
275711	275794	+	84	119943794	Ping_R0011	-	^{18 Tyr tRNA}
275906	275980	+	75	119943794	Ping_R0012	-	^{01 Gly tRNA}
296678	298216	+	1539	119943794	Ping_R0013	-	16S ribosomal RNA
298420	298496	+	77	119943794	Ping_R0014	-	^{14 Ile tRNA}
298547	298622	+	76	119943794	Ping_R0015	-	^{02 Ala tRNA}
299135	302026	+	2892	119943794	Ping_R0016	-	23S ribosomal RNA
302228	302343	+	116	119943794	Ping_R0017	-	5S ribosomal RNA
302424	302543	+	120	119943794	Ping_R0017a	-	5S ribosomal RNA
302550	302625	+	76	119943794	Ping_R0018	-	^{12 Thr tRNA}
409144	409220	-	77	119943794	Ping_R0019	-	^{16 Met tRNA}
481020	481095	-	76	119943794	Ping_R0020	-	^{17 Phe tRNA}
481150	481225	-	76	119943794	Ping_R0021	-	^{12 Thr tRNA}
481307	481382	-	76	119943794	Ping_R0022	-	^{17 Phe tRNA}
507130	507214	+	85	119943794	Ping_R0023	-	^{15 Leu tRNA}
629300	629376	-	77	119943794	Ping_R0024	-	^{06 Asp tRNA}
629459	629535	-	77	119943794	Ping_R0025	-	^{06 Asp tRNA}
629795	629871	-	77	119943794	Ping_R0026	-	^{06 Asp tRNA}
629980	630056	-	77	119943794	Ping_R0027	-	^{06 Asp tRNA}
630198	630274	-	77	119943794	Ping_R0028	-	^{06 Asp tRNA}
646011	646086	+	76	119943794	Ping_R0029	-	^{20 Trp tRNA}
740891	742429	+	1539	119943794	Ping_R0030	-	16S ribosomal RNA
742633	742709	+	77	119943794	Ping_R0031	-	^{14 Ile tRNA}
742760	742835	+	76	119943794	Ping_R0032	-	^{02 Ala tRNA}
743315	746206	+	2892	119943794	Ping_R0033	-	23S ribosomal RNA
746513	746628	+	116	119943794	Ping_R0034	-	5S ribosomal RNA
922914	922989	+	76	119943794	Ping_R0035	-	^{10 Lys tRNA}
923154	923229	+	76	119943794	Ping_R0036	-	^{10 Lys tRNA}
923325	923400	+	76	119943794	Ping_R0037	-	^{10 Lys tRNA}
923510	923585	+	76	119943794	Ping_R0038	-	^{10 Lys tRNA}
923681	923756	+	76	119943794	Ping_R0039	-	^{10 Lys tRNA}
1017902	1017986	+	85	119943794	Ping_R0040	-	^{15 Leu tRNA}
1033433	1034971	+	1539	119943794	Ping_R0042	-	16S ribosomal RNA
1035169	1035244	+	76	119943794	Ping_R0043	-	^{04 Glu tRNA}
1035795	1038686	+	2892	119943794	Ping_R0044	-	23S ribosomal RNA
1038887	1039004	+	118	119943794	Ping_R0045	-	5S ribosomal RNA
1110422	1110497	-	76	119943794	Ping_R0046	-	^{11 Arg tRNA}
1180465	1180540	+	76	119943794	Ping_R0047	-	^{07 Asn tRNA}
1180819	1180894	+	76	119943794	Ping_R0048	-	^{07 Asn tRNA}
1181095	1181170	+	76	119943794	Ping_R0049	-	^{07 Asn tRNA}
1181425	1181500	+	76	119943794	Ping_R0050	-	^{07 Asn tRNA}
1182466	1182542	+	77	119943794	Ping_R0051	-	^{16 Met tRNA}
1182588	1182664	+	77	119943794	Ping_R0052	-	^{16 Met tRNA}
1182710	1182786	+	77	119943794	Ping_R0053	-	^{16 Met tRNA}
1182832	1182908	+	77	119943794	Ping_R0054	-	^{16 Met tRNA}
1182954	1183030	+	77	119943794	Ping_R0055	-	^{16 Met tRNA}
1183076	1183152	+	77	119943794	Ping_R0056	-	^{16 Met tRNA}
1183198	1183274	+	77	119943794	Ping_R0057	-	^{16 Met tRNA}
1192694	1194232	+	1539	119943794	Ping_R0058	-	16S ribosomal RNA
1194430	1194505	+	76	119943794	Ping_R0059	-	^{04 Glu tRNA}
1195044	1197935	+	2892	119943794	Ping_R0060	-	23S ribosomal RNA
1198129	1198244	+	116	119943794	Ping_R0061	-	5S ribosomal RNA
1375887	1375970	-	84	119943794	Ping_R0062	-	^{18 Tyr tRNA}
1469418	1469722	+	305	119943794	Ping_R0063	-	RNA component of RNaseP
1484301	1484391	+	91	119943794	Ping_R0064	-	^{08 Ser tRNA}
1484810	1484900	+	91	119943794	Ping_R0065	-	^{08 Ser tRNA}
1488721	1488796	+	76	119943794	Ping_R0066	-	^{01 Gly tRNA}
1488812	1488885	+	74	119943794	Ping_R0067	-	^{19 Cys tRNA}
1488900	1488985	+	86	119943794	Ping_R0068	-	^{15 Leu tRNA}
1611957	1612033	-	77	119943794	Ping_R0069	-	^{16 Met tRNA}
1612152	1612236	-	85	119943794	Ping_R0070	-	^{15 Leu tRNA}
1612244	1612318	-	75	119943794	Ping_R0071	-	^{05 Gln tRNA}
1612455	1612529	-	75	119943794	Ping_R0072	-	^{05 Gln tRNA}
1612584	1612668	-	85	119943794	Ping_R0073	-	^{15 Leu tRNA}
1612774	1612850	-	77	119943794	Ping_R0074	-	^{16 Met tRNA}
1957924	1958274	-	351	119943794	Ping_R0075	-	tmRNA
1981065	1981140	-	76	119943794	Ping_R0076	-	^{02 Ala tRNA}
1982968	1983043	+	76	119943794	Ping_R0077	-	^{13 Val tRNA}
1983149	1983224	+	76	119943794	Ping_R0078	-	^{13 Val tRNA}
1983330	1983405	+	76	119943794	Ping_R0079	-	^{13 Val tRNA}
1983568	1983643	+	76	119943794	Ping_R0080	-	^{13 Val tRNA}
1983804	1983879	+	76	119943794	Ping_R0081	-	^{13 Val tRNA}
1984042	1984117	+	76	119943794	Ping_R0082	-	^{13 Val tRNA}
1984280	1984355	+	76	119943794	Ping_R0083	-	^{13 Val tRNA}
2402491	2402606	-	116	119943794	Ping_R0084	-	SRP RNA
2727441	2727526	-	86	119943794	Ping_R0085	-	^{15 Leu tRNA}
2727851	2727936	-	86	119943794	Ping_R0086	-	^{15 Leu tRNA}
2756289	2756379	-	91	119943794	Ping_R0087	-	^{08 Ser tRNA}
2870119	2870206	-	88	119943794	Ping_R0088	-	^{08 Ser tRNA}
2928250	2928365	-	116	119943794	Ping_R0089	-	5S ribosomal RNA
2928672	2931563	-	2892	119943794	Ping_R0090	-	23S ribosomal RNA
2932194	2933732	-	1539	119943794	Ping_R0091	-	16S ribosomal RNA
3013781	3013856	+	76	119943794	Ping_R0092	-	^{13 Val tRNA}
3122070	3122146	-	77	119943794	Ping_R0093	-	^{03 Pro tRNA}
3122307	3122391	-	85	119943794	Ping_R0094	-	^{15 Leu tRNA}
3122422	3122497	-	76	119943794	Ping_R0095	-	^{09 His tRNA}
3170682	3170758	-	77	119943794	Ping_R0096	-	^{11 Arg tRNA}
3171323	3171399	-	77	119943794	Ping_R0097	-	^{03 Pro tRNA}
3174236	3174312	-	77	119943794	Ping_R0098	-	^{03 Pro tRNA}
3227380	3227466	+	87	119943794	Ping_R0099	-	^{15 Leu tRNA}
3255405	3255480	+	76	119943794	Ping_R0100	-	Xaa tRNA
3395902	3396017	-	116	119943794	Ping_R0101	-	5S ribosomal RNA
3396320	3399211	-	2892	119943794	Ping_R0102	-	23S ribosomal RNA
3399843	3401379	-	1537	119943794	Ping_R0103	-	16S ribosomal RNA
3944298	3944413	-	116	119943794	Ping_R0104	-	5S ribosomal RNA
3944718	3947609	-	2892	119943794	Ping_R0105	-	23S ribosomal RNA
3948158	3948233	-	76	119943794	Ping_R0106	-	^{04 Glu tRNA}
3948373	3949911	-	1539	119943794	Ping_R0107	-	16S ribosomal RNA
4051006	4051121	-	116	119943794	Ping_R0108	-	5S ribosomal RNA
4051421	4054312	-	2892	119943794	Ping_R0109	-	23S ribosomal RNA
4054943	4056481	-	1539	119943794	Ping_R0110	-	16S ribosomal RNA
4122509	4122584	-	76	119943794	Ping_R0111	-	^{01 Gly tRNA}
4122618	4122693	-	76	119943794	Ping_R0112	-	^{01 Gly tRNA}
4122737	4122812	-	76	119943794	Ping_R0113	-	^{01 Gly tRNA}
4171471	4171547	-	77	119943794	Ping_R0114	-	^{11 Arg tRNA}
4171627	4171703	-	77	119943794	Ping_R0115	-	^{11 Arg tRNA}
4171766	4171842	-	77	119943794	Ping_R0116	-	^{11 Arg tRNA}
4171861	4171953	-	93	119943794	Ping_R0117	-	^{08 Ser tRNA}
4222013	4222089	-	77	119943794	Ping_R0118	-	^{03 Pro tRNA}
4222129	4222204	-	76	119943794	Ping_R0119	-	^{09 His tRNA}
4222246	4222322	-	77	119943794	Ping_R0120	-	^{11 Arg tRNA}