Геном прокариот/Материалы:NC 008781

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008781            4410291 bp    DNA     circular BCT 11-JAN-2007
   DEFINITION  Polaromonas naphthalenivorans CJ2, complete genome.
   ACCESSION   NC_008781
   VERSION     NC_008781.1  GI:121602919
   KEYWORDS    .
   SOURCE      Polaromonas naphthalenivorans CJ2
     ORGANISM  Polaromonas naphthalenivorans CJ2
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Polaromonas.
   REFERENCE   1  (bases 1 to 4410291)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Madsen,E.L. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Polaromonas naphthalenivorans
               CJ2
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4410291)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4410291)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Madsen,E.L. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000529.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000361
               Source DNA and bacteria available from Eugene L. Madsen
               (elm3@cornell.edu)
               Contacts: Eugene L. Madsen (elm3@cornell.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
265115	265190	+	76	121602919	Pnap_R0002	-	^{11 Arg tRNA}
343179	343255	+	77	121602919	Pnap_R0003	-	^{16 Met tRNA}
425434	426956	+	1523	121602919	Pnap_R0004	-	16S ribosomal RNA
427076	427152	+	77	121602919	Pnap_R0005	-	^{14 Ile tRNA}
427181	427256	+	76	121602919	Pnap_R0006	-	^{02 Ala tRNA}
427603	430484	+	2882	121602919	Pnap_R0007	-	23S ribosomal RNA
430649	430761	+	113	121602919	Pnap_R0008	-	5S ribosomal RNA
759510	759585	+	76	121602919	Pnap_R0009	-	^{12 Thr tRNA}
796908	796984	+	77	121602919	Pnap_R0010	-	^{03 Pro tRNA}
836741	836817	+	77	121602919	Pnap_R0011	-	^{11 Arg tRNA}
907832	907906	-	75	121602919	Pnap_R0012	-	^{11 Arg tRNA}
950908	950984	-	77	121602919	Pnap_R0013	-	^{05 Gln tRNA}
963115	963191	+	77	121602919	Pnap_R0014	-	^{16 Met tRNA}
1021827	1021916	-	90	121602919	Pnap_R0015	-	^{08 Ser tRNA}
1131583	1131658	-	76	121602919	Pnap_R0016	-	^{12 Thr tRNA}
1162395	1162470	+	76	121602919	Pnap_R0017	-	^{02 Ala tRNA}
1162537	1162612	+	76	121602919	Pnap_R0018	-	^{04 Glu tRNA}
1162693	1162769	+	77	121602919	Pnap_R0019	-	^{06 Asp tRNA}
1162892	1162967	+	76	121602919	Pnap_R0020	-	^{04 Glu tRNA}
1163048	1163124	+	77	121602919	Pnap_R0021	-	^{06 Asp tRNA}
1512447	1512531	+	85	121602919	Pnap_R0022	-	^{15 Leu tRNA}
1721370	1721445	+	76	121602919	Pnap_R0023	-	^{13 Val tRNA}
1723499	1723574	+	76	121602919	Pnap_R0024	-	^{09 His tRNA}
1762664	1762765	-	102	121602919	Pnap_R0025	-	SRP RNA
1849669	1851191	+	1523	121602919	Pnap_R0026	-	16S ribosomal RNA
1851311	1851387	+	77	121602919	Pnap_R0027	-	^{14 Ile tRNA}
1851416	1851491	+	76	121602919	Pnap_R0028	-	^{02 Ala tRNA}
1851838	1854719	+	2882	121602919	Pnap_R0029	-	23S ribosomal RNA
1854884	1854996	+	113	121602919	Pnap_R0030	-	5S ribosomal RNA
1976097	1976172	+	76	121602919	Pnap_R0031	-	^{07 Asn tRNA}
2031833	2031909	+	77	121602919	Pnap_R0032	-	^{03 Pro tRNA}
2031951	2032027	+	77	121602919	Pnap_R0033	-	^{11 Arg tRNA}
2152465	2152554	+	90	121602919	Pnap_R0034	-	^{08 Ser tRNA}
2173508	2173583	-	76	121602919	Pnap_R0035	-	^{10 Lys tRNA}
2173594	2173669	-	76	121602919	Pnap_R0036	-	^{10 Lys tRNA}
2426393	2426467	-	75	121602919	Pnap_R0037	-	^{13 Val tRNA}
2577811	2577895	+	85	121602919	Pnap_R0038	-	^{15 Leu tRNA}
2673898	2673974	-	77	121602919	Pnap_R0039	-	^{13 Val tRNA}
2785718	2785791	+	74	121602919	Pnap_R0040	-	^{01 Gly tRNA}
2930517	2930900	-	384	121602919	Pnap_R0041	-	tmRNA
2988726	2988802	-	77	121602919	Pnap_R0042	-	^{03 Pro tRNA}
3039526	3039618	-	93	121602919	Pnap_R0043	-	^{08 Ser tRNA}
3112867	3112953	-	87	121602919	Pnap_R0044	-	^{15 Leu tRNA}
3113043	3113116	-	74	121602919	Pnap_R0045	-	^{19 Cys tRNA}
3113177	3113252	-	76	121602919	Pnap_R0046	-	^{01 Gly tRNA}
3113334	3113407	-	74	121602919	Pnap_R0047	-	^{19 Cys tRNA}
3113467	3113542	-	76	121602919	Pnap_R0048	-	^{01 Gly tRNA}
3119726	3119812	-	87	121602919	Pnap_R0049	-	^{15 Leu tRNA}
3371931	3372015	+	85	121602919	Pnap_R0050	-	^{15 Leu tRNA}
3531928	3532015	-	88	121602919	Pnap_R0051	-	^{08 Ser tRNA}
3570807	3570883	+	77	121602919	Pnap_R0052	-	^{16 Met tRNA}
3654548	3654812	-	265	121602919	Pnap_R0053	-	RNA component of RNaseP
3860274	3860349	-	76	121602919	Pnap_R0054	-	^{17 Phe tRNA}
3881888	3881963	-	76	121602919	Pnap_R0055	-	^{20 Trp tRNA}
3883254	3883328	-	75	121602919	Pnap_R0056	-	^{12 Thr tRNA}
3883400	3883473	-	74	121602919	Pnap_R0057	-	^{01 Gly tRNA}
3883556	3883641	-	86	121602919	Pnap_R0058	-	^{18 Tyr tRNA}