Геном прокариот/Материалы:NC 008786

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008786            5566749 bp    DNA     circular BCT 11-JAN-2007
   DEFINITION  Verminephrobacter eiseniae EF01-2, complete genome.
   ACCESSION   NC_008786
   VERSION     NC_008786.1  GI:121607004
   KEYWORDS    .
   SOURCE      Verminephrobacter eiseniae EF01-2
     ORGANISM  Verminephrobacter eiseniae EF01-2
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Verminephrobacter.
   REFERENCE   1  (bases 1 to 5566749)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Verminephrobacter eiseniae
               EF01-2
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5566749)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5566749)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000542.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001428
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
528385	528461	-	77	121607004	Veis_R0001	-	^{16 Met tRNA}
578922	579022	+	101	121607004	Veis_R0002	-	SRP RNA
738694	738785	+	92	121607004	Veis_R0003	-	^{15 Leu tRNA}
1025203	1025315	-	113	121607004	Veis_R0004	-	5S ribosomal RNA
1025434	1028318	-	2885	121607004	Veis_R0005	-	23S ribosomal RNA
1028601	1028676	-	76	121607004	Veis_R0006	-	^{02 Ala tRNA}
1028713	1028789	-	77	121607004	Veis_R0007	-	^{14 Ile tRNA}
1028876	1030402	-	1527	121607004	Veis_R0008	-	16S ribosomal RNA
1065733	1065809	-	77	121607004	Veis_R0009	-	^{05 Gln tRNA}
1127458	1127533	+	76	121607004	Veis_R0010	-	^{10 Lys tRNA}
1139359	1139443	-	85	121607004	Veis_R0011	-	^{15 Leu tRNA}
1169986	1170062	-	77	121607004	Veis_R0012	-	^{16 Met tRNA}
1580034	1580118	-	85	121607004	Veis_R0013	-	^{15 Leu tRNA}
1760583	1760658	-	76	121607004	Veis_R0014	-	^{10 Lys tRNA}
1920799	1920888	-	90	121607004	Veis_R0015	-	^{08 Ser tRNA}
1980681	1982207	+	1527	121607004	Veis_R0016	-	16S ribosomal RNA
1982294	1982370	+	77	121607004	Veis_R0017	-	^{14 Ile tRNA}
1982407	1982482	+	76	121607004	Veis_R0018	-	^{02 Ala tRNA}
1982765	1985649	+	2885	121607004	Veis_R0019	-	23S ribosomal RNA
1985768	1985880	+	113	121607004	Veis_R0020	-	5S ribosomal RNA
2015009	2015085	-	77	121607004	Veis_R0021	-	^{03 Pro tRNA}
2076006	2076082	-	77	121607004	Veis_R0022	-	^{11 Arg tRNA}
2120629	2120895	-	267	121607004	Veis_R0023	-	RNase P
2557341	2557416	+	76	121607004	Veis_R0024	-	^{11 Arg tRNA}
2557498	2557583	+	86	121607004	Veis_R0025	-	^{18 Tyr tRNA}
2557626	2557699	+	74	121607004	Veis_R0026	-	^{01 Gly tRNA}
2557778	2557852	+	75	121607004	Veis_R0027	-	^{12 Thr tRNA}
2559134	2559209	+	76	121607004	Veis_R0028	-	^{20 Trp tRNA}
2609490	2609566	-	77	121607004	Veis_R0029	-	^{16 Met tRNA}
2691773	2691847	+	75	121607004	Veis_R0030	-	^{13 Val tRNA}
3038919	3038994	-	76	121607004	Veis_R0031	-	^{09 His tRNA}
3041148	3041223	-	76	121607004	Veis_R0032	-	^{13 Val tRNA}
3162439	3162523	-	85	121607004	Veis_R0033	-	^{15 Leu tRNA}
3232613	3232689	+	77	121607004	Veis_R0034	-	^{11 Arg tRNA}
3398621	3398694	-	74	121607004	Veis_R0035	-	^{01 Gly tRNA}
3447533	3447609	+	77	121607004	Veis_R0036	-	^{03 Pro tRNA}
3461616	3461999	-	384	121607004	Veis_R0037	-	tmRNA
3516298	3516410	-	113	121607004	Veis_R0038	-	5S ribosomal RNA
3516529	3519413	-	2885	121607004	Veis_R0039	-	23S ribosomal RNA
3519696	3519771	-	76	121607004	Veis_R0040	-	^{02 Ala tRNA}
3519808	3519884	-	77	121607004	Veis_R0041	-	^{14 Ile tRNA}
3519971	3521497	-	1527	121607004	Veis_R0042	-	16S ribosomal RNA
3550399	3550474	+	76	121607004	Veis_R0043	-	^{12 Thr tRNA}
3741704	3741780	-	77	121607004	Veis_R0044	-	^{06 Asp tRNA}
3741833	3741908	-	76	121607004	Veis_R0045	-	^{04 Glu tRNA}
3741960	3742035	-	76	121607004	Veis_R0046	-	^{02 Ala tRNA}
3873822	3873911	+	90	121607004	Veis_R0047	-	^{08 Ser tRNA}
3997033	3997108	+	76	121607004	Veis_R0048	-	^{07 Asn tRNA}
4006953	4007028	+	76	121607004	Veis_R0049	-	^{07 Asn tRNA}
4038941	4039030	+	90	121607004	Veis_R0050	-	^{08 Ser tRNA}
4306301	4306377	+	77	121607004	Veis_R0052	-	^{03 Pro tRNA}
4319281	4319356	-	76	121607004	Veis_R0053	-	^{12 Thr tRNA}
4815696	4815772	+	77	121607004	Veis_R0054	-	^{13 Val tRNA}
4818443	4818529	+	87	121607004	Veis_R0055	-	^{15 Leu tRNA}
4824630	4824705	+	76	121607004	Veis_R0056	-	^{01 Gly tRNA}
4824765	4824835	+	71	121607004	Veis_R0057	-	^{19 Cys tRNA}
5037284	5037358	+	75	121607004	Veis_R0058	-	^{11 Arg tRNA}
5205301	5205376	-	76	121607004	Veis_R0059	-	^{17 Phe tRNA}
5461155	5461247	+	93	121607004	Veis_R0060	-	^{08 Ser tRNA}