Геном прокариот/Материалы:NC 009049

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009049            3147721 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence.
   ACCESSION   NC_009049
   VERSION     NC_009049.1  GI:126460778
   KEYWORDS    .
   SOURCE      Rhodobacter sphaeroides ATCC 17029
     ORGANISM  Rhodobacter sphaeroides ATCC 17029
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Rhodobacter.
   REFERENCE   1  (bases 1 to 3147721)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Rhodobacter sphaeroides ATCC
               17029
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3147721)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3147721)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000577.
               URL -- http://www.jgi.doe.gov
                      http://www.rhodobacter.org
               JGI Project ID: 4000715
               Source DNA and bacteria available from Chris Mackenzie
               (Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan
               (Samuel.Kaplan@uth.tmc.edu)
               Contacts: Samuel Kaplan (samuel.kaplan@uth.tmc.edu)
                         Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
75917	75991	-	75	126460778	Rsph17029_R0001	-	^{13 Val tRNA}
87772	89231	+	1460	126460778	Rsph17029_R0002	-	16S ribosomal RNA
89452	89528	+	77	126460778	Rsph17029_R0003	-	^{14 Ile tRNA}
89576	89651	+	76	126460778	Rsph17029_R0004	-	^{02 Ala tRNA}
89899	92816	+	2918	126460778	Rsph17029_R0005	-	23S ribosomal RNA
92914	93031	+	118	126460778	Rsph17029_R0006	-	5S ribosomal RNA
93075	93151	+	77	126460778	Rsph17029_R0007	-	^{16 Met tRNA}
172949	173024	-	76	126460778	Rsph17029_R0008	-	^{12 Thr tRNA}
295859	295948	-	90	126460778	Rsph17029_R0009	-	^{08 Ser tRNA}
314101	314176	-	76	126460778	Rsph17029_R0010	-	^{11 Arg tRNA}
348793	348868	+	76	126460778	Rsph17029_R0011	-	^{20 Trp tRNA}
367470	367545	+	76	126460778	Rsph17029_R0012	-	^{20 Trp tRNA}
557446	557532	+	87	126460778	Rsph17029_R0013	-	^{15 Leu tRNA}
590248	590331	+	84	126460778	Rsph17029_R0014	-	^{15 Leu tRNA}
681946	682021	-	76	126460778	Rsph17029_R0015	-	^{16 Met tRNA}
758917	758993	-	77	126460778	Rsph17029_R0016	-	^{11 Arg tRNA}
767347	767421	-	75	126460778	Rsph17029_R0017	-	^{01 Gly tRNA}
850653	850727	+	75	126460778	Rsph17029_R0018	-	^{04 Glu tRNA}
974403	974750	+	348	126460778	Rsph17029_R0019	-
1055811	1055887	+	77	126460778	Rsph17029_R0020	-	^{03 Pro tRNA}
1313806	1313883	-	78	126460778	Rsph17029_R0021	-	^{03 Pro tRNA}
1461693	1461766	-	74	126460778	Rsph17029_R0022	-	^{01 Gly tRNA}
1526103	1526177	+	75	126460778	Rsph17029_R0023	-	^{05 Gln tRNA}
1555152	1555226	-	75	126460778	Rsph17029_R0024	-	^{13 Val tRNA}
1655806	1655889	-	84	126460778	Rsph17029_R0025	-	^{15 Leu tRNA}
1725419	1725495	-	77	126460778	Rsph17029_R0026	-	^{06 Asp tRNA}
1725531	1725607	-	77	126460778	Rsph17029_R0027	-	^{06 Asp tRNA}
1827841	1827912	+	72	126460778	Rsph17029_R0028	-	^{12 Thr tRNA}
1863644	1863718	+	75	126460778	Rsph17029_R0029	-	^{01 Gly tRNA}
1869177	1869250	-	74	126460778	Rsph17029_R0030	-	^{19 Cys tRNA}
1873018	1873102	-	85	126460778	Rsph17029_R0031	-	^{15 Leu tRNA}
1936729	1936803	+	75	126460778	Rsph17029_R0032	-	^{07 Asn tRNA}
1972534	1972635	+	102	126460778	Rsph17029_R0033	-
1974753	1974842	-	90	126460778	Rsph17029_R0034	-	^{08 Ser tRNA}
2184212	2184286	+	75	126460778	Rsph17029_R0035	-	^{04 Glu tRNA}
2389524	2389600	+	77	126460778	Rsph17029_R0036	-	^{11 Arg tRNA}
2408791	2408866	-	76	126460778	Rsph17029_R0037	-	^{17 Phe tRNA}
2417575	2417649	+	75	126460778	Rsph17029_R0038	-	^{12 Thr tRNA}
2502811	2502911	+	101	126460778	Rsph17029_R0039	-	SRP RNA; RNA component of signal recognition particle
2542432	2542508	+	77	126460778	Rsph17029_R0040	-	^{09 His tRNA}
2655036	2655112	-	77	126460778	Rsph17029_R0041	-	^{03 Pro tRNA}
2734589	2734663	+	75	126460778	Rsph17029_R0042	-	^{10 Lys tRNA}
2788869	2788944	+	76	126460778	Rsph17029_R0043	-	^{02 Ala tRNA}
2860832	2860908	-	77	126460778	Rsph17029_R0044	-	^{11 Arg tRNA}
2963234	2963318	+	85	126460778	Rsph17029_R0045	-	^{15 Leu tRNA}