Геном прокариот/Материалы:NC 009050

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009050            1219053 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence.
   ACCESSION   NC_009050
   VERSION     NC_009050.1  GI:126463752
   KEYWORDS    .
   SOURCE      Rhodobacter sphaeroides ATCC 17029
     ORGANISM  Rhodobacter sphaeroides ATCC 17029
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Rhodobacter.
   REFERENCE   1  (bases 1 to 1219053)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome2 of Rhodobacter sphaeroides ATCC
               17029
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1219053)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1219053)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000578.
               URL -- http://www.jgi.doe.gov
                      http://www.rhodobacter.org
               JGI Project ID: 4000715
               Source DNA and bacteria available from Chris Mackenzie
               (Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan
               (Samuel.Kaplan@uth.tmc.edu)
               Contacts: Samuel Kaplan (samuel.kaplan@uth.tmc.edu)
                         Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
20991	21066	+	76	126463752	Rsph17029_R0046	-	^{02 Ala tRNA}
359297	359373	+	77	126463752	Rsph17029_R0047	-	^{16 Met tRNA}
443280	443353	-	74	126463752	Rsph17029_R0048	-	^{15 Leu tRNA}
556746	556821	-	76	126463752	Rsph17029_R0049	-	^{13 Val tRNA}
575903	577362	+	1460	126463752	Rsph17029_R0050	-	16S ribosomal RNA
577583	577659	+	77	126463752	Rsph17029_R0051	-	^{14 Ile tRNA}
577707	577782	+	76	126463752	Rsph17029_R0052	-	^{02 Ala tRNA}
578030	580947	+	2918	126463752	Rsph17029_R0053	-	23S ribosomal RNA
581045	581162	+	118	126463752	Rsph17029_R0054	-	5S ribosomal RNA
581206	581282	+	77	126463752	Rsph17029_R0055	-	^{16 Met tRNA}
592862	592951	-	90	126463752	Rsph17029_R0056	-	^{08 Ser tRNA}
611549	613008	+	1460	126463752	Rsph17029_R0057	-	16S ribosomal RNA
613229	613305	+	77	126463752	Rsph17029_R0058	-	^{14 Ile tRNA}
613353	613428	+	76	126463752	Rsph17029_R0059	-	^{02 Ala tRNA}
613676	616593	+	2918	126463752	Rsph17029_R0060	-	23S ribosomal RNA
616691	616808	+	118	126463752	Rsph17029_R0061	-	5S ribosomal RNA
616852	616928	+	77	126463752	Rsph17029_R0062	-	^{16 Met tRNA}
819100	820559	+	1460	126463752	Rsph17029_R0063	-	16S ribosomal RNA
820780	820856	+	77	126463752	Rsph17029_R0064	-	^{14 Ile tRNA}
820904	820979	+	76	126463752	Rsph17029_R0065	-	^{02 Ala tRNA}
821227	824144	+	2918	126463752	Rsph17029_R0066	-	23S ribosomal RNA
824242	824359	+	118	126463752	Rsph17029_R0067	-	5S ribosomal RNA
824403	824479	+	77	126463752	Rsph17029_R0068	-	^{16 Met tRNA}
976710	976783	+	74	126463752	Rsph17029_R0069	-	^{01 Gly tRNA}
1191159	1191248	+	90	126463752	Rsph17029_R0070	-	^{08 Ser tRNA}