Материалы:NC 009052

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009052            5127376 bp    DNA     circular BCT 27-FEB-2007
   DEFINITION  Shewanella baltica OS155, complete genome.
   ACCESSION   NC_009052
   VERSION     NC_009052.1  GI:126172257
   KEYWORDS    .
   SOURCE      Shewanella baltica OS155
     ORGANISM  Shewanella baltica OS155
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 5127376)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Brettar,I., Klappenbach,J., Konstantinidis,K.,
               Rodrigues,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Shewanella baltica OS155
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5127376)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (26-FEB-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5127376)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Brettar,I., Klappenbach,J., Konstantinidis,K.,
               Rodrigues,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000563.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634605
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
44440	45976	+	1537	126172257	Sbal_R0001	-	16S ribosomal RNA
46345	49247	+	2903	126172257	Sbal_R0002	-	23S ribosomal RNA
49388	49502	+	115	126172257	Sbal_R0003	-	5S ribosomal RNA
266577	268113	+	1537	126172257	Sbal_R0004	-	16S ribosomal RNA
268482	271384	+	2903	126172257	Sbal_R0005	-	23S ribosomal RNA
271525	271639	+	115	126172257	Sbal_R0006	-	5S ribosomal RNA
271675	271751	+	77	126172257	Sbal_R0007	-	^{06 Asp tRNA}
461209	462745	+	1537	126172257	Sbal_R0008	-	16S ribosomal RNA
462846	462922	+	77	126172257	Sbal_R0009	-	^{14 Ile tRNA}
463060	463135	+	76	126172257	Sbal_R0010	-	^{02 Ala tRNA}
463504	466406	+	2903	126172257	Sbal_R0011	-	23S ribosomal RNA
466548	466662	+	115	126172257	Sbal_R0012	-	5S ribosomal RNA
466697	466772	+	76	126172257	Sbal_R0013	-	^{12 Thr tRNA}
466812	466926	+	115	126172257	Sbal_R0014	-	5S ribosomal RNA
623621	623696	+	76	126172257	Sbal_R0015	-	^{01 Gly tRNA}
623739	623814	+	76	126172257	Sbal_R0016	-	^{01 Gly tRNA}
623857	623932	+	76	126172257	Sbal_R0017	-	^{01 Gly tRNA}
623975	624050	+	76	126172257	Sbal_R0018	-	^{01 Gly tRNA}
1160630	1160716	-	87	126172257	Sbal_R0019	-	^{15 Leu tRNA}
1160803	1160889	-	87	126172257	Sbal_R0020	-	^{15 Leu tRNA}
1160944	1161019	-	76	126172257	Sbal_R0021	-	^{17 Phe tRNA}
1169037	1170573	+	1537	126172257	Sbal_R0022	-	16S ribosomal RNA
1170942	1173844	+	2903	126172257	Sbal_R0023	-	23S ribosomal RNA
1173985	1174099	+	115	126172257	Sbal_R0024	-	5S ribosomal RNA
1320670	1320746	-	77	126172257	Sbal_R0025	-	^{16 Met tRNA}
1486942	1487294	-	353	126172257	Sbal_R0026	-
1872113	1872189	+	77	126172257	Sbal_R0027	-	^{03 Pro tRNA}
1872307	1872383	+	77	126172257	Sbal_R0028	-	^{11 Arg tRNA}
1872393	1872468	+	76	126172257	Sbal_R0029	-	^{09 His tRNA}
1896226	1896341	+	116	126172257	Sbal_R0030	-	SRP RNA; RNA component of signal recognitionparticle
2033457	2033532	+	76	126172257	Sbal_R0031	-	^{10 Lys tRNA}
2033718	2033793	+	76	126172257	Sbal_R0032	-	^{10 Lys tRNA}
2033866	2033943	+	78	126172257	Sbal_R0033	-	^{10 Lys tRNA}
2033981	2034056	+	76	126172257	Sbal_R0034	-	^{10 Lys tRNA}
2034117	2034192	+	76	126172257	Sbal_R0035	-	^{10 Lys tRNA}
2034265	2034342	+	78	126172257	Sbal_R0036	-	^{10 Lys tRNA}
2034380	2034455	+	76	126172257	Sbal_R0037	-	^{10 Lys tRNA}
2034515	2034590	+	76	126172257	Sbal_R0038	-	^{10 Lys tRNA}
2034629	2034704	+	76	126172257	Sbal_R0039	-	^{10 Lys tRNA}
2239902	2239989	+	88	126172257	Sbal_R0040	-	^{08 Ser tRNA}
2324109	2324185	+	77	126172257	Sbal_R0041	-	^{06 Asp tRNA}
2488993	2489069	-	77	126172257	Sbal_R0042	-	^{13 Val tRNA}
2489108	2489184	-	77	126172257	Sbal_R0043	-	^{13 Val tRNA}
2512085	2512175	+	91	126172257	Sbal_R0044	-	^{08 Ser tRNA}
2562223	2562309	-	87	126172257	Sbal_R0045	-	^{15 Leu tRNA}
2562359	2562432	-	74	126172257	Sbal_R0046	-	^{19 Cys tRNA}
2562456	2562531	-	76	126172257	Sbal_R0047	-	^{01 Gly tRNA}
2606461	2606545	+	85	126172257	Sbal_R0048	-	^{18 Tyr tRNA}
2606617	2606701	+	85	126172257	Sbal_R0049	-	^{18 Tyr tRNA}
2606786	2606870	+	85	126172257	Sbal_R0050	-	^{18 Tyr tRNA}
2614125	2614200	+	76	126172257	Sbal_R0051	-	^{07 Asn tRNA}
2614260	2614335	+	76	126172257	Sbal_R0052	-	^{07 Asn tRNA}
2614368	2614443	+	76	126172257	Sbal_R0053	-	^{07 Asn tRNA}
2614487	2614562	+	76	126172257	Sbal_R0054	-	^{07 Asn tRNA}
2969961	2970037	-	77	126172257	Sbal_R0055	-	^{03 Pro tRNA}
2997764	2997850	-	87	126172257	Sbal_R0056	-	^{15 Leu tRNA}
2997991	2998077	-	87	126172257	Sbal_R0057	-	^{15 Leu tRNA}
2998127	2998200	-	74	126172257	Sbal_R0058	-	^{19 Cys tRNA}
2998245	2998320	-	76	126172257	Sbal_R0059	-	^{01 Gly tRNA}
3002134	3002224	-	91	126172257	Sbal_R0060	-	^{08 Ser tRNA}
3002778	3002868	-	91	126172257	Sbal_R0061	-	^{08 Ser tRNA}
3005780	3005870	-	91	126172257	Sbal_R0062	-	^{08 Ser tRNA}
3015328	3015404	+	77	126172257	Sbal_R0063	-	^{16 Met tRNA}
3015446	3015522	+	77	126172257	Sbal_R0064	-	^{16 Met tRNA}
3015668	3015744	+	77	126172257	Sbal_R0065	-	^{16 Met tRNA}
3015792	3015868	+	77	126172257	Sbal_R0066	-	^{16 Met tRNA}
3016013	3016089	+	77	126172257	Sbal_R0067	-	^{16 Met tRNA}
3016234	3016310	+	77	126172257	Sbal_R0068	-	^{16 Met tRNA}
3083011	3083125	-	115	126172257	Sbal_R0069	-	5S ribosomal RNA
3083266	3086168	-	2903	126172257	Sbal_R0070	-	23S ribosomal RNA
3086532	3086607	-	76	126172257	Sbal_R0071	-	^{02 Ala tRNA}
3086746	3086822	-	77	126172257	Sbal_R0072	-	^{14 Ile tRNA}
3086894	3088430	-	1537	126172257	Sbal_R0073	-	16S ribosomal RNA
3292725	3292800	-	76	126172257	Sbal_R0074	-	^{04 Glu tRNA}
3293014	3293089	-	76	126172257	Sbal_R0075	-	^{04 Glu tRNA}
3293208	3293283	-	76	126172257	Sbal_R0076	-	^{04 Glu tRNA}
3293402	3293477	-	76	126172257	Sbal_R0077	-	^{04 Glu tRNA}
3293596	3293671	-	76	126172257	Sbal_R0078	-	^{04 Glu tRNA}
3293806	3293881	-	76	126172257	Sbal_R0079	-	^{02 Ala tRNA}
3293986	3294061	-	76	126172257	Sbal_R0080	-	^{04 Glu tRNA}
3294193	3294268	-	76	126172257	Sbal_R0081	-	^{04 Glu tRNA}
3294404	3294479	-	76	126172257	Sbal_R0082	-	^{02 Ala tRNA}
3296613	3296688	+	76	126172257	Sbal_R0083	-	^{13 Val tRNA}
3296763	3296838	+	76	126172257	Sbal_R0084	-	^{13 Val tRNA}
3296878	3296953	+	76	126172257	Sbal_R0085	-	^{13 Val tRNA}
3297002	3297077	+	76	126172257	Sbal_R0086	-	^{13 Val tRNA}
3297106	3297181	+	76	126172257	Sbal_R0087	-	^{13 Val tRNA}
3297210	3297285	+	76	126172257	Sbal_R0088	-	^{13 Val tRNA}
3297314	3297389	+	76	126172257	Sbal_R0089	-	^{13 Val tRNA}
3468454	3468529	+	76	126172257	Sbal_R0090	-	^{11 Arg tRNA}
3566207	3566282	+	76	126172257	Sbal_R0091	-	^{17 Phe tRNA}
3566304	3566379	+	76	126172257	Sbal_R0092	-	^{12 Thr tRNA}
3567059	3567134	+	76	126172257	Sbal_R0093	-	^{17 Phe tRNA}
3567142	3567217	+	76	126172257	Sbal_R0094	-	^{12 Thr tRNA}
3644167	3644243	-	77	126172257	Sbal_R0095	-	^{11 Arg tRNA}
3644347	3644438	-	92	126172257	Sbal_R0096	-	^{08 Ser tRNA}
3644484	3644560	-	77	126172257	Sbal_R0097	-	^{11 Arg tRNA}
3644618	3644694	-	77	126172257	Sbal_R0098	-	^{11 Arg tRNA}
3644743	3644819	-	77	126172257	Sbal_R0099	-	^{11 Arg tRNA}
3644907	3644983	-	77	126172257	Sbal_R0100	-	^{11 Arg tRNA}
3645018	3645094	-	77	126172257	Sbal_R0101	-	^{11 Arg tRNA}
3645117	3645208	-	92	126172257	Sbal_R0102	-	^{08 Ser tRNA}
3801756	3801832	-	77	126172257	Sbal_R0104	-	^{16 Met tRNA}
3801915	3802001	-	87	126172257	Sbal_R0105	-	^{15 Leu tRNA}
3817657	3817731	-	75	126172257	Sbal_R0106	-	^{05 Gln tRNA}
3817771	3817855	-	85	126172257	Sbal_R0107	-	^{15 Leu tRNA}
3817931	3818007	-	77	126172257	Sbal_R0108	-	^{16 Met tRNA}
3818009	3818083	-	75	126172257	Sbal_R0109	-	^{05 Gln tRNA}
3818108	3818182	-	75	126172257	Sbal_R0110	-	^{05 Gln tRNA}
3818244	3818328	-	85	126172257	Sbal_R0111	-	^{15 Leu tRNA}
3818424	3818500	-	77	126172257	Sbal_R0112	-	^{16 Met tRNA}
3850982	3851058	-	77	126172257	Sbal_R0113	-	^{20 Trp tRNA}
4129581	4129657	-	77	126172257	Sbal_R0114	-	^{06 Asp tRNA}
4129693	4129807	-	115	126172257	Sbal_R0115	-	5S ribosomal RNA
4129948	4132850	-	2903	126172257	Sbal_R0116	-	23S ribosomal RNA
4133219	4134755	-	1537	126172257	Sbal_R0117	-	16S ribosomal RNA
4187629	4187715	-	87	126172257	Sbal_R0118	-	^{15 Leu tRNA}
4582134	4582248	-	115	126172257	Sbal_R0119	-	5S ribosomal RNA
4582389	4585291	-	2903	126172257	Sbal_R0120	-	23S ribosomal RNA
4585660	4587196	-	1537	126172257	Sbal_R0121	-	16S ribosomal RNA
4708355	4708431	-	77	126172257	Sbal_R0122	-	^{03 Pro tRNA}
4708488	4708564	-	77	126172257	Sbal_R0123	-	^{03 Pro tRNA}
4708597	4708672	-	76	126172257	Sbal_R0124	-	^{09 His tRNA}
4708726	4708802	-	77	126172257	Sbal_R0125	-	^{11 Arg tRNA}
4807144	4807441	-	298	126172257	Sbal_R0126	-
4840368	4840482	-	115	126172257	Sbal_R0127	-	5S ribosomal RNA
4840623	4843525	-	2903	126172257	Sbal_R0128	-	23S ribosomal RNA
4843894	4845430	-	1537	126172257	Sbal_R0129	-	16S ribosomal RNA
4879933	4880008	-	76	126172257	Sbal_R0130	-	^{12 Thr tRNA}
4880017	4880090	-	74	126172257	Sbal_R0131	-	^{01 Gly tRNA}
4880130	4880214	-	85	126172257	Sbal_R0132	-	^{18 Tyr tRNA}
4880223	4880298	-	76	126172257	Sbal_R0133	-	^{12 Thr tRNA}
4883688	4883802	-	115	126172257	Sbal_R0134	-	5S ribosomal RNA
4883944	4886846	-	2903	126172257	Sbal_R0135	-	23S ribosomal RNA
4887216	4887291	-	76	126172257	Sbal_R0136	-	^{02 Ala tRNA}
4887429	4887505	-	77	126172257	Sbal_R0137	-	^{14 Ile tRNA}
4887606	4889142	-	1537	126172257	Sbal_R0138	-	16S ribosomal RNA
5070464	5070540	-	77	126172257	Sbal_R0139	-	^{06 Asp tRNA}
5070576	5070690	-	115	126172257	Sbal_R0140	-	5S ribosomal RNA
5070831	5073733	-	2903	126172257	Sbal_R0141	-	23S ribosomal RNA
5074102	5075638	-	1537	126172257	Sbal_R0142	-	16S ribosomal RNA