Геном прокариот/Материалы:NC 009254

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009254            1241007 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Burkholderia vietnamiensis G4 chromosome 3, complete sequence.
   ACCESSION   NC_009254
   VERSION     NC_009254.1  GI:134290884
   KEYWORDS    .
   SOURCE      Burkholderia vietnamiensis G4
     ORGANISM  Burkholderia vietnamiensis G4
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 1241007)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome3 of Burkholderia vietnamiensis G4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1241007)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1241007)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000616.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436384
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
53235	54760	+	1526	134290884	Bcep1808_R0084	-	16S ribosomal RNA
54824	54900	+	77	134290884	Bcep1808_R0085	-	^{14 Ile tRNA}
54939	55014	+	76	134290884	Bcep1808_R0086	-	^{02 Ala tRNA}
55291	58172	+	2882	134290884	Bcep1808_R0087	-	23S ribosomal RNA
58330	58441	+	112	134290884	Bcep1808_R0088	-	5S ribosomal RNA