Геном прокариот/Материалы:NC 009338

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   LOCUS       NC_009338            5619607 bp    DNA     circular BCT 17-APR-2007
   DEFINITION  Mycobacterium gilvum PYR-GCK, complete genome.
   ACCESSION   NC_009338
   VERSION     NC_009338.1  GI:145220606
   KEYWORDS    .
   SOURCE      Mycobacterium gilvum PYR-GCK
     ORGANISM  Mycobacterium gilvum PYR-GCK
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 5619607)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Mycobacterium gilvum PYR-GCK
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5619607)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5619607)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (09-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000656.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000377
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
288923 288996 + 74 145220606 Mflv_R0001 - 01 Gly tRNA
831384 831466 - 83 145220606 Mflv_R0002 - 15 Leu tRNA
846632 846707 - 76 145220606 Mflv_R0003 - 02 Ala tRNA
846843 846916 - 74 145220606 Mflv_R0004 - 14 Ile tRNA
1248988 1249077 + 90 145220606 Mflv_R0005 - 08 Ser tRNA
1252964 1253052 + 89 145220606 Mflv_R0006 - 08 Ser tRNA
1253100 1253172 + 73 145220606 Mflv_R0007 - 11 Arg tRNA
1271357 1271447 + 91 145220606 Mflv_R0008 - 08 Ser tRNA
1332484 1332569 - 86 145220606 Mflv_R0009 - 08 Ser tRNA
1332666 1332758 + 93 145220606 Mflv_R0010 - SRP RNA; RNA component of signal recognition particle
1417917 1417990 - 74 145220606 Mflv_R0011 - 03 Pro tRNA
1455669 1455744 + 76 145220606 Mflv_R0012 - 12 Thr tRNA
1652551 1652625 - 75 145220606 Mflv_R0013 - 12 Thr tRNA
1739588 1739663 - 76 145220606 Mflv_R0014 - 10 Lys tRNA
1739791 1739863 + 73 145220606 Mflv_R0015 - 04 Glu tRNA
1739903 1739979 + 77 145220606 Mflv_R0016 - 06 Asp tRNA
1740021 1740094 + 74 145220606 Mflv_R0017 - 17 Phe tRNA
1884092 1884164 - 73 145220606 Mflv_R0018 - 11 Arg tRNA
1980034 1980109 + 76 145220606 Mflv_R0019 - 02 Ala tRNA
2022565 2022636 - 72 145220606 Mflv_R0020 - 05 Gln tRNA
2054754 2054830 + 77 145220606 Mflv_R0021 - 15 Leu tRNA
2386934 2387006 - 73 145220606 Mflv_R0022 - 11 Arg tRNA
2414610 2416122 + 1513 145220606 Mflv_R0023 - 16S ribosomal RNA
2416551 2419710 + 3160 145220606 Mflv_R0024 - 23S ribosomal RNA
2419793 2419904 + 112 145220606 Mflv_R0025 - 5S ribosomal RNA
2463953 2464037 + 85 145220606 Mflv_R0026 - 15 Leu tRNA
2652379 2652454 - 76 145220606 Mflv_R0027 - 10 Lys tRNA
2653892 2653967 - 76 145220606 Mflv_R0028 - 09 His tRNA
2674083 2674155 - 73 145220606 Mflv_R0029 - 11 Arg tRNA
2704089 2704162 - 74 145220606 Mflv_R0030 - 01 Gly tRNA
2704297 2704373 + 77 145220606 Mflv_R0031 - 03 Pro tRNA
2866420 2866495 + 76 145220606 Mflv_R0032 - 07 Asn tRNA
2878324 2878397 + 74 145220606 Mflv_R0033 - 16 Met tRNA
2932311 2932385 + 75 145220606 Mflv_R0034 - 13 Val tRNA
3066122 3066475 + 354 145220606 Mflv_R0035 - RNase P RNA
3217675 3217760 - 86 145220606 Mflv_R0036 - 15 Leu tRNA
3717086 3717159 - 74 145220606 Mflv_R0037 - 03 Pro tRNA
3739301 3739412 - 112 145220606 Mflv_R0038 - 5S ribosomal RNA
3739495 3742653 - 3159 145220606 Mflv_R0039 - 23S ribosomal RNA
3743082 3744594 - 1513 145220606 Mflv_R0040 - 16S ribosomal RNA
3790949 3791019 - 71 145220606 Mflv_R0041 - Xaa tRNA
3813229 3813305 + 77 145220606 Mflv_R0042 - 15 Leu tRNA
4154724 4154795 - 72 145220606 Mflv_R0043 - 13 Val tRNA
4155427 4155502 + 76 145220606 Mflv_R0044 - 01 Gly tRNA
4155527 4155600 + 74 145220606 Mflv_R0045 - 19 Cys tRNA
4155613 4155687 + 75 145220606 Mflv_R0046 - 13 Val tRNA
4487808 4487883 - 76 145220606 Mflv_R0047 - 04 Glu tRNA
4487946 4488020 - 75 145220606 Mflv_R0048 - 05 Gln tRNA
4684643 4684718 - 76 145220606 Mflv_R0049 - 02 Ala tRNA
4729388 4729753 + 366 145220606 Mflv_R0050 - tmRNA
4948427 4948503 - 77 145220606 Mflv_R0051 - 16 Met tRNA
5441926 5441998 - 73 145220606 Mflv_R0052 - 20 Trp tRNA
5443890 5443963 - 74 145220606 Mflv_R0053 - 16 Met tRNA
5444013 5444085 - 73 145220606 Mflv_R0054 - 12 Thr tRNA
5596430 5596515 - 86 145220606 Mflv_R0055 - 18 Tyr tRNA