Геном прокариот/Материалы:NC 009380

Материал из Викиверситета
(перенаправлено с «Материалы:NC 009380»)
Базовый уровень статей

Выделить только проверенную информацию

Создать черновик

   LOCUS       NC_009380            5183331 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Salinispora tropica CNB-440, complete genome.
   ACCESSION   NC_009380
   VERSION     NC_009380.1  GI:145592566
   KEYWORDS    .
   SOURCE      Salinispora tropica CNB-440
     ORGANISM  Salinispora tropica CNB-440
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Micromonosporineae; Micromonosporaceae; Salinispora.
   REFERENCE   1  (bases 1 to 5183331)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B.,
               Udwary,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Salinispora tropica CNB-440
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5183331)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5183331)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B.,
               Udwary,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000667.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001585
               Source DNA and bacteria available from Paul Jensen
               (pjensen@ucsd.edu)
               Contacts: Paul Jensen (pjensen@ucsd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
13654 13730 + 77 145592566 Strop_R0001 - 14 Ile tRNA
14629 14704 + 76 145592566 Strop_R0002 - 02 Ala tRNA
48840 48925 - 86 145592566 Strop_R0003 - 15 Leu tRNA
67524 67597 + 74 145592566 Strop_R0004 - 01 Gly tRNA
202576 204103 + 1528 145592566 Strop_R0005 - 16S ribosomal RNA
204506 207613 + 3108 145592566 Strop_R0006 - 23S ribosomal RNA
207695 207823 + 129 145592566 Strop_R0007 - 5S ribosomal RNA
234086 234172 + 87 145592566 Strop_R0008 - 08 Ser tRNA
241999 242083 - 85 145592566 Strop_R0009 - 08 Ser tRNA
470769 470852 + 84 145592566 Strop_R0010 - 18 Tyr tRNA
631297 631372 - 76 145592566 Strop_R0011 - 11 Arg tRNA
655708 655803 + 96 145592566 Strop_R0012 - Sec tRNA
830937 831013 + 77 145592566 Strop_R0013 - 02 Ala tRNA
875429 875500 + 72 145592566 Strop_R0014 - 05 Gln tRNA
1012577 1012660 + 84 145592566 Strop_R0015 - 15 Leu tRNA
1103754 1104126 + 373 145592566 Strop_R0016 - tmRNA
1106829 1106904 + 76 145592566 Strop_R0017 - 02 Ala tRNA
1183092 1183166 + 75 145592566 Strop_R0018 - 10 Lys tRNA
1260367 1260453 - 87 145592566 Strop_R0019 - 15 Leu tRNA
1270726 1270801 + 76 145592566 Strop_R0020 - 09 His tRNA
1274262 1274337 + 76 145592566 Strop_R0021 - 10 Lys tRNA
1418924 1418995 + 72 145592566 Strop_R0022 - 05 Gln tRNA
1419095 1419167 + 73 145592566 Strop_R0023 - 04 Glu tRNA
1419332 1419404 + 73 145592566 Strop_R0024 - 04 Glu tRNA
1788599 1788671 + 73 145592566 Strop_R0025 - 01 Gly tRNA
1788706 1788776 + 71 145592566 Strop_R0026 - 19 Cys tRNA
1788789 1788863 + 75 145592566 Strop_R0027 - 13 Val tRNA
1789375 1789447 + 73 145592566 Strop_R0028 - 01 Gly tRNA
1789486 1789557 + 72 145592566 Strop_R0029 - 13 Val tRNA
1822362 1822436 + 75 145592566 Strop_R0030 - 13 Val tRNA
2172798 2174325 + 1528 145592566 Strop_R0031 - 16S ribosomal RNA
2174728 2177835 + 3108 145592566 Strop_R0032 - 23S ribosomal RNA
2177917 2178045 + 129 145592566 Strop_R0033 - 5S ribosomal RNA
2206283 2206356 + 74 145592566 Strop_R0034 - 03 Pro tRNA
3325222 3325305 - 84 145592566 Strop_R0035 - 15 Leu tRNA
3618390 3618466 + 77 145592566 Strop_R0036 - 15 Leu tRNA
3847829 3848184 - 356 145592566 Strop_R0037 - RNA component of RNaseP
3864145 3864219 - 75 145592566 Strop_R0038 - 13 Val tRNA
3921289 3921365 - 77 145592566 Strop_R0039 - 16 Met tRNA
3925076 3925148 - 73 145592566 Strop_R0040 - 07 Asn tRNA
4009222 4009350 - 129 145592566 Strop_R0041 - 5S ribosomal RNA
4009431 4012538 - 3108 145592566 Strop_R0042 - 23S ribosomal RNA
4012942 4014469 - 1528 145592566 Strop_R0043 - 16S ribosomal RNA
4020768 4020841 - 74 145592566 Strop_R0044 - 03 Pro tRNA
4021118 4021191 + 74 145592566 Strop_R0045 - 01 Gly tRNA
4078954 4079026 + 73 145592566 Strop_R0046 - 11 Arg tRNA
4190586 4190660 + 75 145592566 Strop_R0047 - 11 Arg tRNA
4269850 4269923 - 74 145592566 Strop_R0048 - 16 Met tRNA
4270801 4270874 - 74 145592566 Strop_R0049 - 16 Met tRNA
4493369 4493441 - 73 145592566 Strop_R0050 - 20 Trp tRNA
4494820 4494892 - 73 145592566 Strop_R0051 - 16 Met tRNA
4494917 4494989 - 73 145592566 Strop_R0052 - 12 Thr tRNA
4565214 4565287 - 74 145592566 Strop_R0053 - 12 Thr tRNA
4687456 4687546 + 91 145592566 Strop_R0054 - 08 Ser tRNA
4687582 4687657 + 76 145592566 Strop_R0055 - 11 Arg tRNA
4785175 4785251 - 77 145592566 Strop_R0056 - 12 Thr tRNA
4936175 4936251 + 77 145592566 Strop_R0057 - 03 Pro tRNA
5030668 5030741 - 74 145592566 Strop_R0058 - 17 Phe tRNA
5030841 5030917 - 77 145592566 Strop_R0059 - 06 Asp tRNA
5030944 5031016 - 73 145592566 Strop_R0060 - 04 Glu tRNA
5062286 5062372 - 87 145592566 Strop_R0061 - 08 Ser tRNA